SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61326

Length: 340 nt

UniGene Fasta

>sp_v3.0_unigene61326
AATGTCAAAACAAATTATCTGGAAACATATCCCCGAATATAGGAGATTGCCTGAGATTGGAGGTGTTGGACTTGTCTCACAACAGGTTTAATGGAAATATACCACGAACAGTTGCAGGTCTTCCAAATTTGCAATTCTTCTTCAACTTGTCCAGCAATTTATTAGAAGGCCCCCTGCCTCTGGAGATTAGCAAGATGACCATGGTTCAAGAAATAATGTTGCTGTCAATCGATTAACTGGTTCTGTTCCAAGCGAACTTGAAAGTTGCACAGAAGTACGCTATCTCAATCTGTCGTGGAATTCATTTGATGGCCCAATTCCAGATTCACTTGGGAAACTG

Ace file of the UniGene sp_v3.0_unigene61326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9SQY7_RICCO	-	-	2.0e-19	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	Gene names
Sma3	GSVIVT00017170001; Os06g0186300; OsI_21950; OsJ_20381; P0568D10.11; POPTRDRAFT_578711; POPTRDRAFT_762951; RCOM_1406740; VITISV_011849;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein chr2:10258148-10261220 FORWARD LENGTH=980	3.0e-16	52%
RefSeq	Arabidopsis thaliana	NP_179990.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	4.0e-16	52%
RefSeq	Populus trichocarpa	XP_002324522.1	predicted protein [Populus trichocarpa]	2.0e-19	58%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 112 - 551

Fln protein: CQNKLSGNISPNIGDCLRLEVLDLSHNRFNGNIPRTVAGLPNLQFFFNLSSNLLEGPLPLEISKMTMVQEIMLLSID*LVLFQANLKVAQKYAISICRGIHLMAQFQIHLGN

Protein Length: 113

Fln nts: AATGTCAAAACAAATTATCTGGAAACATATCCCCGAATATAGGAGATTGCCTGAGATTGGAGGTGTTGGACTTGTCTCACAACAGGTTTAATGGAAATATACCACGAACAGTTGCAGGTCTTCCAAATTTGCAATTCTTCTTCAACTTGTCCAGCAATTTATTAGAAGGCCCCCTGCCTCTGGAGATTAGCAAGATGACCATGGTTCAAGAAATAATGTTGCTGTCAATCGATTAACTGGTTCTGTTCCAAGCGAACTTGAAAGTTGCACAGAAGTACGCTATCTCAATCTGTCGTGGAATTCATTTGATGGCCCAATTCCAGATTCACTTGGGAAACTG

Fln Alignment:

G5KS2UX02I30MI___QNKLSGNISPNIGDCLRLEVLDLSHNRFNGNIPRTVAGXXXXXXXXXXXXXXXEGPLPLEISKMTMVQEIMLLSID*LVLFQANLK--VAQKYAISICRGIHLMAQFQIHLGN
B8LRW5_______________QNELSGNISPSIGDCLRLEVLDLSHNRFHGNIPRTVAGLRNLQFYFNLSSNLLEVSLPLEISKMTMVQEINVAVNRLTGSIPSGLESCTEVQYLNLSWNSFDLMVQFQIHLGN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain