SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61316

Length: 197 nt

UniGene Fasta

>sp_v3.0_unigene61316
AATGTACTTCTGTCGATGGCCAATACCAGATAGGCATATATACTTTAAGGCCTATACAATATGGAGAAGAAATCACATTTGATTATAATTCTCTGACAGAGAGCAAGGATGAGTACGAAGTGTAAACTGTGTGTCTATGCGGCAGTCATGGTTGTAGGGGTANCTATTTTAANCTTGCAGTTGCAGGAGCTTTTCAA

Ace file of the UniGene sp_v3.0_unigene61316

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SET domain-containing protein (ISS) [Ostreococcus tauri] emb\|CAL53729.1\| SET domain-containing protein (ISS) [Ostreococcus tauri]	-	-	1.0e-09	50%
FL-Next	sp=Probable histone-lysine N-methyltransferase ATXR3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	71%
Sma3	SET domain protein	-	-	1.148e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3	Histone-lysine N-methyltransferase.	EC:2.1.1.43	-	2.25e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Lysine degradation	00310		2.25e-06	%

Source	Gene names
Sma3	ATXR3; At4g15180; FCAALL.214; GSVIVT00026090001; GSVIVT00031861001; Os08g0180100; OsI_28046; OsJ_26262; P0455A11.13; POPTRDRAFT_594422; POPTRDRAFT_763921; RCOM_1546600; SDG2; SDG903; SDG904; SET2; VITISV_000601; VITISV_006637; VITISV_033129; dl3635w;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	GO:0015662	Molecular Function	-
Sma3	histone-lysine N-methyltransferase activity	GO:0018024	Molecular Function	-
Sma3	ATP biosynthetic process	GO:0006754	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SET domain	IPR001214	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Histone-lysine N-methyltransferase	IPR015722	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15180.1	SDG2, ATXR3 SET domain protein 2 chr4:8651999-8662178 FORWARD LENGTH=2335	9.0e-24	70%
RefSeq	Arabidopsis thaliana	NP_193253.4	putative histone-lysine N-methyltransferase ATXR3 [Arabidopsis thaliana]	1.0e-23	70%
RefSeq	Populus trichocarpa	XP_002310475.1	SET domain protein [Populus trichocarpa]	1.0e-24	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O23372

Fln msg: Distance to subject end: 396 aas, your sequence is shorter than subject: 65 - 2335

Fln protein: CTSVDGQYQIGIYTLRPIQYGEEITFDYNSLTESKDEYEV*TVCLCGSHGCRGNYFNLAVAGAFQ

Protein Length: 66

Fln nts: AATGTACTTCTGTCGATGGCCAATACCAGATAGGCATATATACTTTAAGGCCTATACAATATGGAGAAGAAATCACATTTGATTATAATTCTCTGACAGAGAGCAAGGATGAGTACGAAGTGTAAACTGTGTGTCTATGCGGCAGTCATGGTTGTAGGGGTAaCTATTTTAAcCTTGCAGTTGCAGGAGCTTTTCAA

Fln Alignment:

G5KS2UX02F3SAG___TSVDGQYQIGIYTLRPIQYGEEITFDYNSLTESKDEYEV*TVCLCGSHGCRGNYFNLAVAGAFQ
O23372_______________TAVDGHYQIGIYSVRAIEYGEEITFDYNSVTESKEEYEA-SVCLCGSQVCRGSYLNLTGEGAFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain