SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61313

Length: 239 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene61313
AAAGAGAGGCTTTGTAGCGGAGAAAGTAAGGTTGATCAATTTGGCAGAAAGTCAGGCTTTTGGTGCAGCTTTTTGCAGAATCTCAGAGGTTCCGAACTCAGGATGCCGAACCCAAAGGTTTTCTTTGATATGCAAGCCTCTGCACTTCAAGGGTTCGTCGTTCCACCGCGTGATCCCAGGGTTCATGTGCCAGGGCGGTGACTTCACAAGGGGCAACGGTACCGGTGGAGAGTCACATT

Ace file of the UniGene sp_v3.0_unigene61313 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=4 Tax=Pinaceae RepID=C9EGT5_9CONI	-	-	5.0e-07	100%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus halepensis (Aleppo pine).	-	-	0.0	100%
Sma3	Peptidyl-prolyl cis-trans isomerase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	43H1; 46C02.10; 56B23-g9; AT3G63400; At2g16600; At2g21130; At2g29960; At3g55920; At3g56070; At3g63400; At4g34870; At4g38740; At5g58710; B1331F11.9; CHLREDRAFT_136386; CHLREDRAFT_196289; CHLREDRAFT_28893; CHLREDRAFT_30639; CHLREDRAFT_34270; CHLREDRAFT_5639

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	membrane fraction	GO:0005624	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	multivesicular body	GO:0005771	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	Golgi stack	GO:0005795	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptide binding	GO:0042277	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5Y2E8

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 87 aas, your sequence is shorter than subject: 46 - 172

Fln protein: MPNPKVFFDMxxPLHFKGSSFHRVIPGFMCQGGDFTRGNGTGGESH

Protein Length: 47

Fln nts: AAAGAGAGGCTTTGTAGCGGAGAAAGTAAGGTTGATCAATTTGGCAGAAAGTCAGGCTTTTGGTGCAGCTTTTTGCAGAATCTCAGAGGTTCCGAACTCAGG_-_ATGCCGAACCCAAAGGTTTTCTTTGATATGxxxxxxCCTCTGCACTTCAAGGGTTCGTCGTTCCACCGCGTGATCCCAGGGTTCATGTGCCAGGGCGGTGACTTCACAAGGGGCAACGGTACCGGTGGAGAGTCACATT

Fln Alignment:

G5KS2UX02G58MY___MPNPKVFFDMQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKPLHFKGSSFHRVIPGFMCQ
Q5Y2E8_______________MPNPKVFFDMQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKPLHFKGSSFHRVIPGFMCQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain