SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61224

Length: 278 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene61224
TCACATGATGATGAATGAAGGAATTGTACTTTGGCATTATATTTCTGTTGCAGGAATAAAAGTAGACCCTGCTAAGATAGAAGTAATTCTGAAAATTCCAAATCCCAAAACACATAAGGAGGTACGTAGTTTTTTGGGATACGCAAGGTATTAAAGGAGGTTTATAGAAAATTTTTCAAAGATTGCGTCTCCATTATTTTCTCTGCTTACTAAAGATATGGAATTTGTTTGGACAGGGAAATGTGAACGTGCCTTTACAGAGTTAAAGCTGTGACATT

Ace file of the UniGene sp_v3.0_unigene61224 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	44%

Source	Gene names
Sma3	19.t00014; 19.t00017; GSVIVT00000833001; GSVIVT00005459001; GSVIVT00009118001; VITISV_000019; VITISV_000409; VITISV_000510; VITISV_000545; VITISV_000916; VITISV_001382; VITISV_002055; VITISV_002111; VITISV_002563; VITISV_002848; VITISV_002952; VITISV_0030

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P92523

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 42 aas, your sequence is shorter than subject: 91 - 158

Fln protein: HMMMNEGIVLWHYISVAGIKVDPAKIEVILKIPNPKTHKEVRSFLGYARY*RRFIENFSKIASPLFSLLTKDMEFVWTGKCERAFTELKL*

Protein Length: 92

Fln nts: TCACATGATGATGAATGAAGGAATTGTACTTTGGCATTATATTTCTGTTGCAGGAATAAAAGTAGACCCTGCTAAGATAGAAGTAATTCTGAAAATTCCAAATCCCAAAACACATAAGGAGGTACGTAGTTTTTTGGGATACGCAAGGTATTAAAGGAGGTTTATAGAAAATTTTTCAAAGATTGCGTCTCCATTATTTTCTCTGCTTACTAAAGATATGGAATTTGTTTGGACAGGGAAATGTGAACGTGCCTTTACAGAGTTAAAGCTGTGACATT

Fln Alignment:

G5KS2UX02FZ2SL___HYISVAGIKVDPAKIEVILKIPNPKTHKEVRSFLGYARY*RRFIENFSKIASPLFSLLTKDMEFVWTGKCERAFTELK
P92523_______________HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain