SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61035

Length: 228 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene61035
TCAGGTGCAAGACATCTCGAAGACATCTTTTAGGTGCCACTATGGGCACTACGAGTTCTTGGTTATGCCATTTGGGCTAGCTAACACCCTAGCAATTTTCCAGTCATGCATGAACCATGTGTTCAATAAACAGTTGTGGAAGTACTTACTTCTTTTCTTTGAAGATATATTGATCTACAACAATACCTGGGAGGGCATCTAATGCACTTGGACGAGCTGTTGGGGATT

Ace file of the UniGene sp_v3.0_unigene61035 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Taxus baccata RepID=Q56GF5_TAXBA	-	-	3.0e-19	70%
FL-Next	sp=RNA-directed DNA polymerase homolog; berteroana). Mitochondrion.	-	-	0.0	41%
Sma3	Reverse transcriptase	-	-	8.754e-11	-

Source	Gene names
Sma3	At2g05610; LOC_Os03g05350; LOC_Os03g30350; LOC_Os10g13960; LOC_Os10g28310; LOC_Os11g08610; OJ1004_F02.14; OSIGBa0118P15.5; OSJNBa0004B23.3; OSJNBa0004L19.22; OSJNBa0014J14.7; OSJNBa0053B21.11; OSJNBa0059D20.8; OSJNBa0067N01.10; OSJNBa0070D17.10; OSJNBb005

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P31843

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 67 - 142

Fln protein: QVQDISKTSFRCHYGHYEFLVMPFGLANTLAIFQSCMNHVFNKQLWKYLLLFFEDILIYNNTWEGI*

Protein Length: 68

Fln nts: TCAGGTGCAAGACATCTCGAAGACATCTTTTAGGTGCCACTATGGGCACTACGAGTTCTTGGTTATGCCATTTGGGCTAGCTAACACCCTAGCAATTTTCCAGTCATGCATGAACCATGTGTTCAATAAACAGTTGTGGAAGTACTTACTTCTTTTCTTTGAAGATATATTGATCTACAACAATACCTGGGAGGGCATCTAA___TGCACTTGGACGAGCTGTTGGGGATT

Fln Alignment:

G5KS2UX02JX48G___DISKTSFRCHYGHYEFLVMPFGLANTLAIFQSCMNHVFNKQLWKYLLLFFEDILIY
P31843_______________DEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain