SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene61000

Length: 158 nt

UniGene Fasta

>sp_v3.0_unigene61000
AATGTAATCCAGTATTTCATGATCAGTCGAAGCACATTGATATCAGGTGTCACTTTGTCAGAGACTGTGTCCAACGAGGAGCAGTACAGTTGAGATACACGCCTACAAGAGATCAAGTGGCAGACATCCTCACCAAGGCTCCAGGAAGAACAAAGTTT

Ace file of the UniGene sp_v3.0_unigene61000

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0253000 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E2C1_ORYSJ	-	-	6.0e-12	64%
FL-Next	tr=Putative uncharacterized protein; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	68%
Sma3	cDNA clone:002-113-D05, full insert sequence	-	-	2.924e-06	-

Source	Gene names
Sma3	CCHC; Os02g0253000;

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: H0I4D8

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 52 - 196

Fln protein: CNPVFHDQSKHIDIRCHFVRDCVQRGAVQLRYTPTRDQVADILTKAPGRTKF

Protein Length: 53

Fln nts: AATGTAATCCAGTATTTCATGATCAGTCGAAGCACATTGATATCAGGTGTCACTTTGTCAGAGACTGTGTCCAACGAGGAGCAGTACAGTTGAGATACACGCCTACAAGAGATCAAGTGGCAGACATCCTCACCAAGGCTCCAGGAAGAACAAAGTTT

Fln Alignment:

G5KS2UX02HER8D___NPVFHDQSKHIDIRCHFVRDCVQRGAVQLRYTPTRDQVADILTKAPGRTKF
H0I4D8_______________NPVHHDRSKHIDIRYHFIRDCVDRGEVDIEHVGTGDQLADILTKALGRVKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain