SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60988

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene60988
AATGTCTTTCTTCGCCCACATTGCCACTGAACTTCGTGTGAATCGTTGATTTTGGTCCCAGGCTGCCAGTACCGCACCCAGCGATTCGCCCACTAAGTGGGGATTATGCTACAAAGAGGAACTCAGCCCAGACAGCACTTATTGTGAATCAAGCCTAGTCTACCCTTGTGCTCCTGGAGTCAGCTACCATGGACGGGGAGCTTTGCCAGTATACTGGAACTACAATTATGGA

Ace file of the UniGene sp_v3.0_unigene60988

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chitinase-like protein 2 [Arabidopsis thaliana] gb\|AEE75884.1\| chitinase-like protein 2 [Arabidopsis thaliana]	-	-	6.0e-17	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Chitinase-like protein	-	-	1.144e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chitinase.	EC:3.2.1.14	-	2.295e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Amino sugar and nucleotide sugar metabolism	00520		2.295e-09	%

Source	Gene names
Sma3	At3g16920; CTL1; CTL2; Chia7; GSVIVT00033113001; MtrDRAFT_AC160516g8v2; OJ1081_B12.117; OJ1186_G01.3; Os08g0522500; OsI_29936; OsJ_27982; PHYPADRAFT_60959; POPTRDRAFT_1072706; POPTRDRAFT_245331; POPTRDRAFT_723883; RCOM_0999860; VITISV_034797; chi2; rq30;

Source	GOs	Term	Type	Identity
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	chitin binding	GO:0008061	Molecular Function	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 19, catalytic	IPR000726	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Glycoside hydrolase, family 19	IPR016283	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16920.1	CTL2, ATCTL2 chitinase-like protein 2 chr3:5776663-5777886 REVERSE LENGTH=348	1.0e-22	72%
RefSeq	Arabidopsis thaliana	NP_188317.2	chitinase-like protein 2 [Arabidopsis thaliana]	1.0e-22	72%
RefSeq	Populus trichocarpa	XP_002316022.1	predicted protein [Populus trichocarpa]	1.0e-21	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT20

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 77 - 320

Fln protein: MSFFAHIATELRVNR*FWSQAASTAPSDSPTKWGLCYKEELSPDSTYCESSLVYPCAPGVSYHGRGALPVYWNYNYG

Protein Length: 78

Fln nts: AATGTCTTTCTTCGCCCACATTGCCACTGAACTTCGTGTGAATCGTTGATTTTGGTCCCAGGCTGCCAGTACCGCACCCAGCGATTCGCCCACTAAGTGGGGATTATGCTACAAAGAGGAACTCAGCCCAGACAGCACTTATTGTGAATCAAGCCTAGTCTACCCTTGTGCTCCTGGAGTCAGCTACCATGGACGGGGAGCTTTGCCAGTATACTGGAACTACAATTATGGA

Fln Alignment:

G5KS2UX02I385G___SFFAHIATELRVNR*FWSQAASTAPSDSPTKWGLCYKEELSPDSTYCESSLVYPCAPGVSYHGRGALPVYWNYNYG
A9NT20_______________AFFAHVATETSCES--LMAQSSTATTDSPTKWGLCYKEELSPDSTYCESSLVYPCAPGVSYHGRGALPVYWNYNYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain