SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60986

Length: 103 nt

UniGene Fasta

>sp_v3.0_unigene60986
AATGTACATATTTGGTGGCAGTTGTTGTGGGAGAATTTGAATATATAGAACAAACAACTACAGCAGGAAATAAAGTTCGCGTGTATTGTGAGGTTGGTAAAAC

Ace file of the UniGene sp_v3.0_unigene60986

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os09g0362500 protein (Fragment) n=4 Tax=Oryza sativa RepID=Q0J2B5_ORYSJ	-	-	9.0e-05	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, puromycin-sensitive aminopeptidase	IPR015568	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB1

Fln msg: Distance to subject end: 643 aas, your sequence is shorter than subject: 33 - 871

Fln protein: CTYLVAVVVGEFEYIEQTTTAGNKVRVYCEVGK

Protein Length: 34

Fln nts: AATGTACATATTTGGTGGCAGTTGTTGTGGGAGAATTTGAATATATAGAACAAACAACTACAGCAGGAAATAAAGTTCGCGTGTATTGTGAGGTTGGTAAAAC

Fln Alignment:

G5KS2UX02HAIMO___TYLVAVVVGEFEYIEQTTTAGNKVRVYCEVGK
B8LRB1_______________TYLVAIVVGELEFIEQTTTAGNKVRVYCEVGK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain