SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60924

Length: 109 nt

UniGene Fasta

>sp_v3.0_unigene60924
CTTCATGGAACTTACATCCAGTGTACAGCAGCAATATCCTTATTCAGCACGTCACTATCCTTGCACCACTTGACTCACCAAACACTGATGGAATTGATCCAGACTCCTG

Ace file of the UniGene sp_v3.0_unigene60924

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] emb\|CAA23048.1\| putative polygalacturonase [Arabidopsis thaliana] emb\|CAB81300.1\| putative polygalacturonase [Arabidopsis thaliana] gb\|AAL32775.1\|	-	-	3.0e-10	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Polygalacturonase, putative	-	-	4.452e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	6.29e-10	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	6.29e-10	%
Sma3	Starch and sucrose metabolism	00500	6.29e-10	%
Sma3	Metabolic pathways	01100	6.29e-10	%

Source	Gene names
Sma3	6J23.27; 8F2.19; AT4g23500; AT4g23820; At3g61490; At4g23500; At4g23820; At4g23820/F9D16.290; At5g41870; B1040D09.13-1; B1040D09.13-2; F16G20.200; F2A19.90; F9D16.290; GSVIVT00002441001; GSVIVT00002554001; GSVIVT00026920001; GSVIVT00028234001; GSVIVT000347

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G23820.1	Pectin lyase-like superfamily protein chr4:12397217-12400050 REVERSE LENGTH=444	4.0e-15	82%
RefSeq	Arabidopsis thaliana	NP_194113.1	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana]	6.0e-15	82%
RefSeq	Populus trichocarpa	XP_002304552.1	predicted protein [Populus trichocarpa]	4.0e-15	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 35 - 472

Fln protein: SWNLHPVYSSNILIQHVTILAPLDSPNTDGIDPDS

Protein Length: 36

Fln nts: CTTCATGGAACTTACATCCAGTGTACAGCAGCAATATCCTTATTCAGCACGTCACTATCCTTGCACCACTTGACTCACCAAACACTGATGGAATTGATCCAGACTCCTG

Fln Alignment:

G5KS2UX02I0D9D___SWNLHPVYSSNILIQHVTILAPLDSPNTDGIDPDS
B8LQW0_______________AWNLHPVYSSNILIQYVTILAPLDSPNTDGIDPDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain