SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60895

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene60895
AATGTGTACTTTTAGTAATGGTCTCTATGCTGCGACTTGGTCAATCTGCAGTTCTCCCACACCCAATTGACGACGATTCCTATGATCGGATTAGTCTCTGCATACGCATCCTTACATGTCCTGATGATTTCTTCAGGAAAGTATGGTTGCAATCTTGTCGGGAGAGCTTTGTG

Ace file of the UniGene sp_v3.0_unigene60895

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative coatmer beta subunit [Fragaria x ananassa]	-	-	3.0e-15	70%
FL-Next	sp=Coatomer subunit beta; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Coatomer subunit beta-2	-	-	6.195e-09	-

Source	Gene names
Sma3	At4g31480; At4g31490; F3L17.50; F3L17.60; GSVIVT00025293001; GSVIVT00032317001; LOC_Os01g17430; LOC_Os11g07280; OSJNBa0036E02.23; OSJNBa0055G24; OSJNBb0063D09; Os01g0281400; Os11g0174000; OsI_01415; OsI_35302; OsJ_001282; OsJ_031814; OsJ_33144; PHYPADRAFT

Source	GOs	Term	Type	Identity
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	-
Sma3	Coatomer, beta subunit, C-terminal	IPR011710	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Coatomer beta subunit	IPR016460	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31480.1	Coatomer, beta subunit chr4:15264145-15267384 FORWARD LENGTH=948	6.0e-19	65%
RefSeq	Arabidopsis thaliana	NP_001190880.1	coatomer subunit beta-1 [Arabidopsis thaliana]	7.0e-19	65%
RefSeq	Populus trichocarpa	XP_002330796.1	predicted protein [Populus trichocarpa]	6.0e-20	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR52

Fln msg: Distance to subject end: 304 aas, your sequence is shorter than subject: 57 - 948

Fln protein: CVLLVMVSMLRLGQSAVLPHPIDDDSYDRISLCIRILTCPDDFFRKVWLQSCRESFV

Protein Length: 58

Fln nts: AATGTGTACTTTTAGTAATGGTCTCTATGCTGCGACTTGGTCAATCTGCAGTTCTCCCACACCCAATTGACGACGATTCCTATGATCGGATTAGTCTCTGCATACGCATCCTTACATGTCCTGATGATTTCTTCAGGAAAGTATGGTTGCAATCTTGTCGGGAGAGCTTTGTG

Fln Alignment:

G5KS2UX02IKCKW___LLVMVSMLRLGQSAVLPHPIDDDSYDRISLCIRILTCPDDFFRKVWLQSCRESFV
C0PR52_______________LLIMVSMLRLGQSSVLPHPIDDDSYDRISLCIRILTCPDDFFKKVWLQSCRESFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain