SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60873

Length: 167 nt

UniGene Fasta

>sp_v3.0_unigene60873
AATGTAAATGAATGTGAATATCGGCATAGCGAGAGTGCAAGAATCAATCCAAGACATTGCTGGTACTGGTTGTCAGGGAACTGTTTGAACCCACATTGTGCATTTAGACATCCGCCACTTGAAGGGCATCCGACAACATCAGGCACTGAGTCATTAACAGCATCTGG

Ace file of the UniGene sp_v3.0_unigene60873

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger CCCH domain-containing protein 17 [Arabidopsis thaliana] sp\|Q9ZUM0.1\|C3H17_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 17; Short=AtC3H17 gb\|AAC97218.1\| expressed protein [Arabidopsis thaliana] gb\|AAN41294.1\| unknown protein	-	-	1.0e-14	82%
FL-Next	sp=Zinc finger CCCH domain-containing protein 19; Oryza sativa subsp. japonica (Rice).	-	-	0.0	61%
Sma3	Zinc finger C-x8-C-x5-C-x3-H type family protein	-	-	1.45e-07	-

Source	Gene names
Sma3	At2g02160; F5O4.7; GSVIVT00016862001; GSVIVT00021274001; H0624F09.12; LOC_Os02g58440; LOC_Os04g57600; OJ1149_C12.8; OSJNBb0004A17.5; Os02g0831100; Os04g0671800; OsI_17873; OsJ_008677; OsJ_015854; POPTRDRAFT_657068; POPTRDRAFT_658643; RCOM_0221100; RCOM_03

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G02160.1	CCCH-type zinc finger family protein chr2:553407-555899 REVERSE LENGTH=669	1.0e-19	82%
RefSeq	Arabidopsis thaliana	NP_027420.1	zinc finger CCCH domain-containing protein 17 [Arabidopsis thaliana]	1.0e-19	82%
RefSeq	Populus trichocarpa	XP_002312505.1	predicted protein, partial [Populus trichocarpa]	1.0e-19	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6K977

Fln msg: Distance to subject end: 555 aas, your sequence is shorter than subject: 55 - 647

Fln protein: NVNECEYRHSESARINPRHCWYWLSGNCLNPHCAFRHPPLEGHPTTSGTESLTAS

Protein Length: 56

Fln nts: AATGTAAATGAATGTGAATATCGGCATAGCGAGAGTGCAAGAATCAATCCAAGACATTGCTGGTACTGGTTGTCAGGGAACTGTTTGAACCCACATTGTGCATTTAGACATCCGCCACTTGAAGGGCATCCGACAACATCAGGCACTGAGTCATTAACAGCATCTGG

Fln Alignment:

G5KS2UX02JEJ96___NECEYRHSESARINPRHCWYWLSGNCLNPHCAFRHPPLE---GHPTTSGTESLTA
Q6K977_______________SECEYRHSDAARMNPRDCWYWFNGNCANPKCSFRHPPLDGLVGAPTTPRTSQQSA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain