SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60847

Length: 198 nt

UniGene Fasta

>sp_v3.0_unigene60847
AAAGAACAAAAGCGGCAATTCAATGCTTGAAAAGGAAGAGACTCTATGAAGTGCAAATAGAACAGCTTGGAAATTACCAGCTAAGAATCCATGATCAGATGATCATGTTGGAAGGTGCAAAGGCAACAACCCATTCGTCCAACACCCCAGCAGGCACGCCCACATAATACAGCTGAAGAAGATGAGCTTGCTGCACTG

Ace file of the UniGene sp_v3.0_unigene60847

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar protein sorting-associated protein 32-1 [Arabidopsis thaliana] sp\|O82197.1\|VP321_ARATH RecName: Full=Vacuolar protein sorting-associated protein 32 homolog 1; Short=AtVPS32-1; AltName: Full=Charged multivesicular body protein 4 homolog 1; AltName	-	-	8.0e-14	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	Charged multivesicular body protein 4b	-	-	1.038e-11	-

Source	Gene names
Sma3	At2g19830; At4g29160; CHMP4-1; CHMP4-2; F19B15.190; F6F22.14; GSVIVT00016618001; GSVIVT00034232001; LOC_Os11g03060; LOC_Os12g02830; Os06g0608500; Os09g0267600; Os11g0123500; Os12g0121400; OsI_23660; OsI_30625; OsI_34912; OsI_37279; OsJ_21933; OsJ_28603; O

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	serine-tRNA ligase activity	GO:0004828	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	seryl-tRNA aminoacylation	GO:0006434	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Snf7	IPR005024	-	-
Sma3	Seryl-tRNA synthetase, class IIa, N-terminal	IPR015866	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G19830.1	SNF7.2, VPS32 SNF7 family protein chr2:8558101-8559389 REVERSE LENGTH=213	2.0e-19	86%
RefSeq	Arabidopsis thaliana	NP_179573.1	vacuolar protein sorting-associated protein 32-1 [Arabidopsis thaliana]	2.0e-19	86%
RefSeq	Populus trichocarpa	XP_002330526.1	predicted protein [Populus trichocarpa]	1.0e-19	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYS9

Fln msg: your sequence is shorter than subject: 55 - 108

Fln protein: RTKAAIQCLKRKRLYEVQIEQLGNYQLRIHDQMIMLEGAKATTHSSNTPAGTPT*

Protein Length: 56

Fln nts: AAAGAACAAAAGCGGCAATTCAATGCTTGAAAAGGAAGAGACTCTATGAAGTGCAAATAGAACAGCTTGGAAATTACCAGCTAAGAATCCATGATCAGATGATCATGTTGGAAGGTGCAAAGGCAACAACCCATTCGTCCAACACCCCAGCAGGCACGCCCACATAA___TACAGCTGAAGAAGATGAGCTTGCTGCACTG

Fln Alignment:

G5KS2UX02G2I94___KAAIQCLKRKRLYEVQIEQLGNYQLRIHDQMIMLEGAKATTHS
A9NYS9_______________KAAIQCLKRKRLYEVQIEQLGNYQLRIHDQMIMLEGAKATTET

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain