SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60782

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene60782
ATGGGGTTCAACAGAAAGAGCTTGCAATTTATTTTAGTCATAGCAACCTTCAAAAATTCCATTTGAGGTTGGCTTTGCTGAATACCATGGGTGTTTGTTATAAGGGATGGAGCTTTAGTACAACAACTAACTTTGCTGGATGACTATTGGAAAGTGAACCCCTGCAACCATTCAACAAAGGTACAACAAGTTCTACAGGCATATAAAAGGCAACTTTAGGATG

Ace file of the UniGene sp_v3.0_unigene60782

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Coatomer alpha subunit-like protein n=2 Tax=Lotus japonicus RepID=Q70I39_LOTJA	-	-	8.0e-09	60%
FL-Next	sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00004883001; GSVIVT00014508001;

Source	GOs	Term	Type	Identity
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62020.1	Coatomer, alpha subunit chr1:22919814-22923728 FORWARD LENGTH=1216	7.0e-14	60%
RefSeq	Arabidopsis thaliana	NP_176393.1	coatomer subunit alpha-1 [Arabidopsis thaliana]	9.0e-14	60%
RefSeq	Populus trichocarpa	XP_002321558.1	predicted protein [Populus trichocarpa]	8.0e-12	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94A40

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 70 aas, your sequence is shorter than subject: 47 - 1216

Fln protein: GVQQKELAIYFSHSNLQKFHLRLALLNTMGVCYKGWSFSTTTNFAG*

Protein Length: 48

Fln nts: ATGGGGTTCAACAGAAAGAGCTTGCAATTTATTTTAGTCATAGCAACCTTCAAAAATTCCATTTGAGGTTGGCTTTGCTGAATACCATGGGTGTTTGTTATAAGGGATGGAGCTTTAGTACAACAACTAACTTTGCTGGATGACTATTGGAAAGTGAACCCCTGCAACCATTCAACAAAGGTACAACAAGTTCTACAGGCATATAAAAGGCAACTTTAGGATG

Fln Alignment:

F7QVD2L01C9HLR___VQQKELAIYFSHSNLQKFHLRLALLNTMGVCYKGWSFSTTTNFAG*LLESEPL
Q94A40_______________VRQQELAAYFTHCNLQTPHLRLALLSAMGVCYKAKNLATASNFARRLLETSPV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain