SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60764

Length: 161 nt

UniGene Fasta

>sp_v3.0_unigene60764
AATGTACTGGTCTGACAACTGAAGTTAAGTCTGTGAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGATGATCCAGCAAAG

Ace file of the UniGene sp_v3.0_unigene60764

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor 1-alpha n=1 Tax=Capsicum annuum RepID=Q9M516_CAPAN	-	-	4.0e-13	92%
FL-Next	sp=Elongation factor 1-alpha; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Elongation factor 1-alpha	-	-	1.224e-36	-

Source	Gene names
Sma3	A1; A2; A3; A4; AT1G07930; AT1G07940; AT5G60390; AcoEF1a; At1g07920; At1g07920/T6D22.2; At1g07930; At1g07940; At5g60390; BLT63; EF-1; EF-1-alpha; EF-1-alpha1; EF-1alpha; EF1; EF1-A; EF1-a; EF1-a1; EF1-alpha; EF1A; EF1A1; EF1A2; EF1A3; EF1A4; EF1A5; EF1A6;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60390.1	GTP binding Elongation factor Tu family protein chr5:24289226-24290675 FORWARD LENGTH=449	1.0e-16	87%
RefSeq	Arabidopsis thaliana	NP_001032107.1	Elongation factor 1-alpha [Arabidopsis thaliana]	1.0e-16	87%
RefSeq	Populus trichocarpa	XP_002326338.1	predicted protein [Populus trichocarpa]	2.0e-17	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTP0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 124 aas, your sequence is shorter than subject: 53 - 447

Fln protein: NVLV*QLKLSL*MHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSKMIQQ

Protein Length: 54

Fln nts: AATGTACTGGTCTGACAACTGAAGTTAAGTCTGTGAATGCATCATGAAGCTCTTCAGGAGGCATTGCCTGGTGACAATGTGGGATTCAATGTTAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGTTATGTGGCATCTGATTCCAAGATGATCCAGCAAAG

Fln Alignment:

G5KS2UX02I9WNP___SL*MHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASDSK
C0PTP0_______________SVEMHHEALQEAYPGDNVGFNVKNVAVKDLKRGYVASDSK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain