SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60729

Length: 333 nt

UniGene Fasta

>sp_v3.0_unigene60729
TTTCGACTAGAGTAGGAAATGAGCTAGGTGCCAACAGGCCTGGAAAAGCACGGAGGGCCATGATTGTAGCACTTTCTGTGGCTGTTGTACTGGGATTCCTGGCCATGACTTTCACAACCACCATGCGTCATAGGTGGGCCAGAATGTTTACAGACGACCAGGAAATCATTTCCCTAACATCCTTGGCATTGCCCATCATAGGCCTGTGTGAGCTTGGAAACTGCCCCCAGACTACAGGGTGTGGCGTTCTCAGGGGAACAGCCCGTCCTGCCACCGGTGCAACATTAATCTGGGCTCCTTCTACTTTGTTGGCATGCCAGTCGCTATTCTCAT

Ace file of the UniGene sp_v3.0_unigene60729

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MATE efflux family protein [Arabidopsis thaliana] gb\|AAF82254.1\|AC008051_5 Identical to gene ZF14 from Arabidopsis thaliana gb\|AB028198 and is a member of an uncharacterized integral membrane protein UPF PF\|01554 family dbj\|BAA87939.1\| ZF14 [Arabidopsis t	-	-	2.0e-36	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Sma3	Multidrug resistance pump, putative	-	-	2.296e-20	-

Source	Gene names
Sma3	AT4g23030; AT4g29140; At1g58340; At1g71870; At2g38510; At4g23030; At4g29140; At5g19700; At5g49130; At5g52050; At5g52050/MSG15_13; F14O23.25; F17M19.2; F19B15.170; F19C14.5; F7H19.220; GSVIVT00001094001; GSVIVT00001728001; GSVIVT00007400001; GSVIVT00015036

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S8	IPR000630	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G52050.1	MATE efflux family protein chr5:21138933-21140450 FORWARD LENGTH=505	7.0e-40	66%
RefSeq	Arabidopsis thaliana	NP_200018.1	mate efflux domain-containing protein [Arabidopsis thaliana]	1.0e-39	66%
RefSeq	Populus trichocarpa	XP_002301101.1	predicted protein [Populus trichocarpa]	1.00053e-42	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKL5

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 110 - 500

Fln protein: STRVGNELGANRPGKARRAMIVALSVAVVLGFLAMTFTTTMRHRWARMFTDDQEIISLTSLALPIIGLCELGNCPQTTGCGVLRGTARPATGATLIWAPSTLLACQSLFS

Protein Length: 111

Fln nts: TTTCGACTAGAGTAGGAAATGAGCTAGGTGCCAACAGGCCTGGAAAAGCACGGAGGGCCATGATTGTAGCACTTTCTGTGGCTGTTGTACTGGGATTCCTGGCCATGACTTTCACAACCACCATGCGTCATAGGTGGGCCAGAATGTTTACAGACGACCAGGAAATCATTTCCCTAACATCCTTGGCATTGCCCATCATAGGCCTGTGTGAGCTTGGAAACTGCCCCCAGACTACAGGGTGTGGCGTTCTCAGGGGAACAGCCCGTCCTGCCACCGGTGCAACATTAATCTGGGCTCCTTCTACTTTGTTGGCATGCCAGTCGCTATTCTCAT

Fln Alignment:

F7QVD2L01EMZVW___STRVGNELGANRPGKARRAMIVALSVAVVLGFLAMTFTTTMRHRWARMFTDDQEIISLTSLALPIIGLCELGNCPQTTGCGVLRGTARPATGATLIWAPSTLLACQSLF
B8LKL5_______________SVRVSNELGAGRPRAAKFSVIVVVGTTFLVGVVLMAIIFITRNEFAVAFTDSKVVMSAVAQLAPLLAFTMLLNSVQPVLSGVAIGAGWQALVAYI------NLACYYLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain