SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60712

Length: 347 nt

UniGene Fasta

>sp_v3.0_unigene60712
ATGGGGGGCAACATGCTAGCAAGTTTGGAAGGATGCCATGATGGAGGAATATCAATCCATTAGGAAGAATGATGTGTGAAAATTTGTGTTGAGAGTCGACCTGAGGGGAAGTTAGTGGTGACTTCCAAGTGGATCTATAAGATTAAGCATGTTGTAGATGGCAACATAGAGAAGTACAAAGAGAGATTCGTGGAAAGAGGGTTCTCCCAGAAAGAGGGAAAGGACTTTGAAGAGACGTTTGCTCCAATCGCCATGTACACTTCTATTAGAACTATTATTTCTATTGTCTCTATTATGGGTTGGAAATTGCATCAGATGGATGTGAAAATTGCTTTCCTCAATGGAGT

Ace file of the UniGene sp_v3.0_unigene60712

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9SLF0_ARATH	-	-	5.0e-16	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	60I2G14; At2g07420; At2g15650; B59J16.7; LOC_Os03g41000; LOC_Os11g44780; OSJNBa0038P21.10; OSJNBa0088I22.18; OSJNBb0011N17.2; OSJNBb0046K02.5; OSJNBb0112E13.7; Os03g41000; Os09g0131600; P0650D04.10; VITISV_002891; VITISV_007944; VITISV_009920; VITISV_0101

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	-
Sma3	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Transcription factor GRAS	IPR005202	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G23160.1	CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 chr4:12129485-12134086 FORWARD LENGTH=1262	2.0e-16	48%
RefSeq	Arabidopsis thaliana	NP_194047.2	cysteine-rich receptor-like protein kinase 8 [Arabidopsis thaliana]	3.0e-16	48%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Distance to subject end: 261 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 91 - 363

Fln protein: CVKICVESRPEGKLVVTSKWIYKIKHVVDGNIEKYKERFVERGFSQKEGKDFEETFAPIAMYTSIRTIISIVSIMGWKLHQMDVKIAFLNG

Protein Length: 92

Fln nts: ATGGGGGGCAACATGCTAGCAAGTTTGGAAGGATGCCATGATGGAGGAATATCAATCCATTAGGAAGAATGATGTGTGAAAATTTGTGTTGAGAGTCGACCTGAGGGGAAGTTAGTGGTGACTTCCAAGTGGATCTATAAGATTAAGCATGTTGTAGATGGCAACATAGAGAAGTACAAAGAGAGATTCGTGGAAAGAGGGTTCTCCCAGAAAGAGGGAAAGGACTTTGAAGAGACGTTTGCTCCAATCGCCATGTACACTTCTATTAGAACTATTATTTCTATTGTCTCTATTATGGGTTGGAAATTGCATCAGATGGATGTGAAAATTGCTTTCCTCAATGGAGT

Fln Alignment:

F7QVD2L01ECEU1___PEGKLVVTSKWIYKIKHVVDGNIEKYKERFVERGFSQKEGKDFEETFAPIAMYXXXXXXXXXXXXMGWKLHQMDVKIAFLNG
B8LKV8_______________PKEKECISVKWVYKTKYKANGELDKHKARLVAKGFAQEYGVDYNETFAPVARLDTIRMVLAIAAQHNWKVYQMDVKSAFLNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain