SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60711

Length: 394 nt

UniGene Fasta

>sp_v3.0_unigene60711
ATGGGGACGGTTTTGAGGCGAGTGCGATGTTGCTGAGGTCGTATGATGCAATTGCAATGTTGAGGGTTTTCTGAGTGGATCGATAGTCGGGACTATTTTCTCTCCTACGATACATATCCTTTTGCTTTGCAACGACATCGCTTCGTTTGCGGCCATTTTCGCGGCTAAAACAAGAGAATATATTGACTTATTGGCGTACCTGGACGAAGAACAGGTCCAGAGAAGTTTTTCTTCTCGGTTTCGAGCTTTTTGCATTGTGATAATACACCAAGAAGCGTCTGTTTGCTTTCGTCCACGAGGTATTGAGGTTACCTTTGAGGTTGATGCCAACGGTATCCTTAATGTAAGAGCAGAGGACAAGGGCACCAAGAAATCAGAGAAGATCACCATAACA

Ace file of the UniGene sp_v3.0_unigene60711

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Luminal binding protein n=3 Tax=Pinaceae RepID=Q40924_PSEMZ	-	-	8.0e-09	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Sma3	BiP	-	-	6.454e-19	-

Source	Gene names
Sma3	At5g28540; At5g42020; BIP; BIP1; BIP2; BIP3; BIP4; BIP5; BIP8; BIPE2; BIPE3; BLP4; BiP; Bip; CHLREDRAFT_133650; CHLREDRAFT_133859; GRP78/BiP; GSVIVT00006687001; GSVIVT00022731001; GSVIVT00037232001; Gm bip; HSC70; MICPUCDRAFT_70270; MICPUN_112720; MJC20.1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002303672.1	predicted protein [Populus trichocarpa]	4.0e-11	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LS17

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 131 aas, your sequence is shorter than subject: 131 - 687

Fln protein: WGRF*GECDVAEVV*CNCNVEGFLSGSIVGTIFSPTIHILLLCNDIASFAAIFAAKTREYIDLLAYLDEEQVQRSFSSRFRAFCIVIIHQEASVCFRPRGIEVTFEVDANGILNVRAEDKGTKKSEKITIT

Protein Length: 132

Fln nts: ATGGGGACGGTTTTGAGGCGAGTGCGATGTTGCTGAGGTCGTATGATGCAATTGCAATGTTGAGGGTTTTCTGAGTGGATCGATAGTCGGGACTATTTTCTCTCCTACGATACATATCCTTTTGCTTTGCAACGACATCGCTTCGTTTGCGGCCATTTTCGCGGCTAAAACAAGAGAATATATTGACTTATTGGCGTACCTGGACGAAGAACAGGTCCAGAGAAGTTTTTCTTCTCGGTTTCGAGCTTTTTGCATTGTGATAATACACCAAGAAGCGTCTGTTTGCTTTCGTCCACGAGGTATTGAGGTTACCTTTGAGGTTGATGCCAACGGTATCCTTAATGTAAGAGCAGAGGACAAGGGCACCAAGAAATCAGAGAAGATCACCATAACA

Fln Alignment:

F7QVD2L01CRFI0___PRG---IEVTFEVDANGILNVRAEDKGTKKSEKITIT
B8LS17_______________PRGVPQIEVTFEVDANGILNVRAEDKGTKKSEKITIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain