SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60697

Length: 267 nt

UniGene Fasta

>sp_v3.0_unigene60697
ATGGGCAAAGTTGTATACAAAAGGTATGCCAGTTTGTATTTCTGCATGTTTGTTCATCGATGCAGATGATAATGAGCTGGAGGTCCTTGAGATAATTCATCATTTTGTCGAGATACTTGATCGATACTTTGGGAGTGTTTGTGAGTTAGGATCTCATCTTCAATTTTCATAAGGCCTATTATATATTAGATGAACTTCTGATTGCCGGGGAAGCTCCAAGAGTCAAGTAAGAAGACGGTTGCACGTGTCATAGCTGCACAGGATTCT

Ace file of the UniGene sp_v3.0_unigene60697

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clathrin assembly protein AP19, putative n=1 Tax=Plasmodium chabaudi RepID=Q4X2E6_PLACH	-	-	2.0e-17	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Clathrin coat assembly protein ap19, putative	-	-	4.425e-09	-

Source	Gene names
Sma3	AAP19-1; AAP19-2; AT4g35410; At2g17380; At4g35410; At4g35410/F23E12_30; F23E12.30; GSVIVT00002691001; GSVIVT00037672001; LOC_Os03g57040; LOC_Os03g59660; OSJNBb0033J23.8; OSJNBb0093E13.11; Os03g0783700; Os03g0811300; OsI_13777; OsJ_12842; PHYPADRAFT_134897

Source	GOs	Term	Type	Identity
Sma3	clathrin coat of trans-Golgi network vesicle	GO:0030130	Cellular Component	-
Sma3	clathrin adaptor complex	GO:0030131	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Clathrin adaptor complex, small chain	IPR000804	-	-
Sma3		IPR015604	-	-
Sma3	Adaptor protein complex, sigma subunit	IPR016635	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G35410.2	-	1.0e-14	85%
RefSeq	Arabidopsis thaliana	NP_849496.1	AP-1 complex subunit sigma-2 [Arabidopsis thaliana]	4.0e-16	85%
RefSeq	Populus trichocarpa	XP_002318532.1	predicted protein [Populus trichocarpa]	9.0e-15	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUL0

Fln msg: Separated hits, possible frame ERROR between 148 and 150, your sequence is shorter than subject: 77 - 142

Fln protein: WAKLYTKGMPVCISACLFIDADDNELEVLEIIHHFVEILDRYFGSVCExxDLIFNFHKAYYILDELLIAGEAPRVK*

Protein Length: 78

Fln nts: ATGGGCAAAGTTGTATACAAAAGGTATGCCAGTTTGTATTTCTGCATGTTTGTTCATCGATGCAGATGATAATGAGCTGGAGGTCCTTGAGATAATTCATCATTTTGTCGAGATACTTGATCGATACTTTGGGAGTGTTTGTGAGTTxxxGGATCTCATCTTCAATTTTCATAAGGCCTATTATATATTAGATGAACTTCTGATTGCCGGGGAAGCTCCAAGAGTCAAGTAAGAAGACGGTTGCACGTGTCATAGCTGCACAGGATTCT

Fln Alignment:

F7QVD2L01AYS3A___LYTKGMPVCISACLFIDADDNELEVLEIIHHFVEILDRYFGSVCELxDLIFNFHKAYYILDELLIAGE
A9NUL0_______________IYRRYAGLFFSMC--VDITDNELAYLESIHLFVEILDHFFSNVCELxDLVFNFHKVYLILDEFILAGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain