SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60679

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene60679
GGAATTAAGTGCAGGAGACATGACAGTTCTCTTCTGGCATAGCAAACATACTTCCAGATTTCCAGGTCTGTGACTTTGCATTCGATCCATGTGGCTACTCCATGAATGCCATTGAAGACCAAGCTTATTCTACAATATACGTGACTCCAGAGGAGAACTGTAGCTATGCAAGCTTTGAAATCATGGATTACAGAGCTCGAGATTTACATGACTTGATTTACAGAATTGCCTCT

Ace file of the UniGene sp_v3.0_unigene60679

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-adenosylmethionine decarboxylase proenzyme n=3 Tax=Vitis vinifera RepID=Q7XZQ9_VITVI	-	-	7.0e-16	61%
FL-Next	sp=S-adenosylmethionine decarboxylase proenzyme; Pinus sylvestris (Scots pine).	-	-	0.0	58%
Sma3	S-adenosylmethionine decarboxylase	-	-	3.774e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:4.1.1.5-	-	1.20203e-41	-

Source	Gene names
Sma3	ADOMETDC2; At3g02470; At3g25570; At5g15950; F1N13_90; GSVIVT00021193001; GSVIVT00038126001; PHYPADRAFT_119537; PHYPADRAFT_119603; PHYPADRAFT_192806; PHYPADRAFT_193850; PHYPADRAFT_193852; PHYPADRAFT_225826; POPTRDRAFT_1085723; POPTRDRAFT_199105; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	adenosylmethionine decarboxylase activity	GO:0004014	Molecular Function	-
Sma3	spermine biosynthetic process	GO:0006597	Biological Process	-
Sma3	spermidine biosynthetic process	GO:0008295	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	S-adenosylmethionine decarboxylase	IPR001985	-	-
Sma3	S-adenosyl-l-methionine decarboxylase leader peptide	IPR012511	-	-
Sma3	S-adenosylmethionine decarboxylase, core	IPR016067	-	-
Sma3	S-adenosylmethionine decarboxylase, conserved site	IPR018166	-	-
Sma3	S-adenosylmethionine decarboxylase subgroup	IPR018167	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G25570.1	Adenosylmethionine decarboxylase family protein chr3:9287413-9288462 REVERSE LENGTH=349	7.0e-20	57%
RefSeq	Arabidopsis thaliana	NP_001189972.1	S-adenosylmethionine decarboxylase [Arabidopsis thaliana]	9.0e-20	57%
RefSeq	Populus trichocarpa	XP_002305295.1	predicted protein, partial [Populus trichocarpa]	5.0e-21	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: G8C847

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 96 aas, your sequence is shorter than subject: 77 - 386

Fln protein: N*VQET*QFSSGIANILPDFQVCDFAFDPCGYSMNAIEDQAYSTIYVTPEENCSYASFEIMDYRARDLHDLIYRIAS

Protein Length: 78

Fln nts: GGAATTAAGTGCAGGAGACATGACAGTTCTCTTCTGGCATAGCAAACATACTTCCAGATTTCCAGGTCTGTGACTTTGCATTCGATCCATGTGGCTACTCCATGAATGCCATTGAAGACCAAGCTTATTCTACAATATACGTGACTCCAGAGGAGAACTGTAGCTATGCAAGCTTTGAAATCATGGATTACAGAGCTCGAGATTTACATGACTTGATTTACAGAATTGCCTCT

Fln Alignment:

F7QVD2L01BFNZ2___SSGIANILPDFQVCDFAFDPCGYSMNAIEDQAYSTIYVTPEENCSYASFEIMDYRAR--DLHDLIYRIAS
G8C847_______________NSGISDILPESKICDFQFDPCGYSMNALEGAAISTIHVTPEDGSSYASFEAMGYNPKDCDLEALVERVLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain