SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60676

Length: 457 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene60676
TGGGGAGTTCTCTTCTCCTGTTCAGTCTGCCATGATCAAGGACCTTGGCCTGACTACGTCTCAGTTTTCTACCTTTGGTTCGCTACTGACTATAGGTGCAATGGTTGGTGCAATACTGAGTGGCCGCACTGCAGATTTCTTGGGCCGGAAAGGAGTAAGTGTTTTAGTTACTGTTAAGGTTCCTGACCATTACTATTATGTACAAAAAGATTGGGTGATTGCATGCATTTGAAGAGAAATTAACTTGTAATGGAGAGTTCCATTTTCTATCACTGAAATCCAACTGATTTCTAGCGCAGGCGTTAAGAGTGTCATCAGCCTGTTATGTGGTTGGATGGCTAATGATATCCCTCTTAAAGGTTTGTTGGGTTACTTATTAAGCCTTGTGGGTGTTTCAGTAGGTAGACCACAAAGTAGTTTTCAATCACAGCAAATAAATTCTTAATCTGCATTATTT

Ace file of the UniGene sp_v3.0_unigene60676 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9RSW9_RICCO	-	-	1.0e-11	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	At2g48020; OsJ_10945; POPTRDRAFT_883279; RCOM_0679120; T9J23.17;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75220.1	Major facilitator superfamily protein chr1:28229412-28232606 REVERSE LENGTH=487	3.0e-14	55%
RefSeq	Arabidopsis thaliana	NP_177658.1	sugar transporter ERD6-like 6 [Arabidopsis thaliana]	4.0e-14	55%
RefSeq	Populus trichocarpa	XP_002319570.1	predicted protein [Populus trichocarpa]	9.0e-15	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8F2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 284 aas, your sequence is shorter than subject: 77 - 501

Fln protein: GEFSSPVQSAMIKDLGLTTSQFSTFGSLLTIGAMVGAILSGRTADFLGRKGVSVLVTVKVPDHYYYVQKDWVIACI*

Protein Length: 78

Fln nts: TGGGGAGTTCTCTTCTCCTGTTCAGTCTGCCATGATCAAGGACCTTGGCCTGACTACGTCTCAGTTTTCTACCTTTGGTTCGCTACTGACTATAGGTGCAATGGTTGGTGCAATACTGAGTGGCCGCACTGCAGATTTCTTGGGCCGGAAAGGAGTAAGTGTTTTAGTTACTGTTAAGGTTCCTGACCATTACTATTATGTACAAAAAGATTGGGTGATTGCATGCATTTGAAGAGAAATTAACTTGTAATGGAGAGTTCCATTTTCTATCACTGAAATCCAACTGATTTCTAGCGCAGGCGTTAAGAGTGTCATCAGCCTGTTATGTGGTTGGATGGCTAATGATATCCCTCTTAAAGGTTTGTTGGGTTACTTATTAAGCCTTGTGGGTGTTTCAGTAGGTAGACCACAAAGTAGTTTTCAATCACAGCAAATAAATTCTTAATCTGCATTATTT

Fln Alignment:

F7QVD2L01CM1BQ___FSSPVQSAMIKDLGLTTSQFSTFGSLLTIGAMVGAILSGRTADFLGRKG
D5A8F2_______________FSSPVQSAMMEDLGLTMSQYSTFGSLLTIGAMVGAILSGRIADFLGRKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain