SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60661

Length: 287 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene60661
TCTTCAACACTGATGGGGAGCTGTGGAAAATGCAAAGGAAGGTTGCGAGCTACGAATTCAACACCAAGTCGCTCCGGAACTTCGTGGTGGAGGCTGTTCAGTGGGAAATCAAGAACCGGCTAATGGTGGTGCTCAAGAGCGCATGCGAAGGGGGAGAGATCATAGACTTGCAGGACGTTCTGATGAGGTTTGCATTCGACAATATCTGCAAGGTGGCGTTCGGTGTCGATCCCGGTTGCCTCCACCCTTCTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGAT

Ace file of the UniGene sp_v3.0_unigene60661 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome P450-dependent fatty acid hydroxylase [Nicotiana tabacum]	-	-	3.0e-26	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Cytochrome P450-dependent fatty acid hydroxylase	-	-	4.942e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Unspecific monooxygenase.	EC:1.14.14.1	-	3.71e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	Fatty acid metabolism	00071	3.71e-16	%
Sma3	Steroid hormone biosynthesis	00140	3.71e-16	%
Sma3	Caffeine metabolism	00232	3.71e-16	%
Sma3	Tryptophan metabolism	00380	3.71e-16	%
Sma3	Arachidonic acid metabolism	00590	3.71e-16	%
Sma3	Linoleic acid metabolism	00591	3.71e-16	%
Sma3	Aminobenzoate degradation	00627	3.71e-16	%
Sma3	Retinol metabolism	00830	3.71e-16	%
Sma3	Metabolism of xenobiotics by cytochrome P450	00980	3.71e-16	%
Sma3	Drug metabolism - cytochrome P450	00982	3.71e-16	%
Sma3	Drug metabolism - other enzymes	00983	3.71e-16	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.71e-16	%
Sma3	Metabolic pathways	01100	3.71e-16	%

Source	Gene names
Sma3	At1g34540; At1g63710; At3g48520; At3g56630; At5g63450; At5g63450/MLE2_8; CYP94A1; CYP94A10; CYP94A11; CYP94A12; CYP94A13; CYP94A14; CYP94A2; CYP94A3; CYP94A4; CYP94A5; CYP94A6; CYP94A9v1; CYP94C5; CYP94C6; CYP94C8v1; CYP94C8v2; CYP94D22; CYP94D23v1; CYP94

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G56630.1	CYP94D2 cytochrome P450, family 94, subfamily D, polypeptide 2 chr3:20978953-20980512 FORWARD LENGTH=499	5.0e-28	63%
RefSeq	Arabidopsis thaliana	NP_191222.1	cytochrome P450, family 94, subfamily D, polypeptide 2 [Arabidopsis thaliana]	7.0e-28	63%
RefSeq	Populus trichocarpa	XP_002333384.1	cytochrome P450 [Populus trichocarpa]	3.0e-32	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LML7

Fln msg: Distance to subject end: 313 aas, your sequence is shorter than subject: 95 - 456

Fln protein: FNTDGELWKMQRKVASYEFNTKSLRNFVVEAVQWEIKNRLMVVLKSACEGGEIIDLQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFND

Protein Length: 96

Fln nts: TCTTCAACACTGATGGGGAGCTGTGGAAAATGCAAAGGAAGGTTGCGAGCTACGAATTCAACACCAAGTCGCTCCGGAACTTCGTGGTGGAGGCTGTTCAGTGGGAAATCAAGAACCGGCTAATGGTGGTGCTCAAGAGCGCATGCGAAGGGGGAGAGATCATAGACTTGCAGGACGTTCTGATGAGGTTTGCATTCGACAATATCTGCAAGGTGGCGTTCGGTGTCGATCCCGGTTGCCTCCACCCTTCTCTGCCCAGGTCCCAATTTGCAGAGGCTTTTAACGAT

Fln Alignment:

F7QVD2L01EIC84___NTDGELWKMQRKVASYEFNTKSLRNFVVEAVQWEIKNRLMVVLKSACEGGEIIDLQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFND
B8LML7_______________NTDGELWKMQRKAASYEFNTKSLRNFVVEAVQWEIKNRLMAVLKNACERGEVIELQDVLMRFAFDNICKVAFGVDPGCLHPSLPRSQFAEAFND

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain