SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60592

Length: 376 nt

UniGene Fasta

>sp_v3.0_unigene60592
ATGGGGACAGAATTAAATCCTGGAGCGTTCTGCAATGAATGGAATCTTAGAAAGCAGGACGAAACAATAGTTTTCAATCCTGACGATGGAGATAAAACCTTTCTGGATAACTCAAGATTTAATGTGGGATATGGCTGACATATCCACTGTAGTGAATGGAAAAGTTAACAGGGAATCTACAAAAGCAGAGATGGTTGCAGAGATACCGGCTGGGAGGGCAGAACATAGTGGTTTTCGAATTAGTAGCACAGCAAGAGACTCAAAGGGATCGGGGGCTGATCGAGCTTCGGGGAGCAAGGATCGGCATACGAAGGTACTTACCTCAAAAGGACCCAGAGACAGAAGAATAAGATTATCTGTTGGAACAGCTGTCAAG

Ace file of the UniGene sp_v3.0_unigene60592

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor TCP2 n=1 Tax=Arabidopsis thaliana RepID=TCP2_ARATH	-	-	6.0e-07	81%
FL-Next	sp=Transcription factor TCP2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	81%

Source	Gene names
Sma3	At1g30210; At4g18390; F12P21.11; F28J12.50; GSVIVT00028330001; TCP2; TCP24; tcp1;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	leaf morphogenesis	GO:0009965	Biological Process	-
Sma3	cell differentiation	GO:0030154	Biological Process	-
Sma3	positive regulation of development, heterochronic	GO:0045962	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor, TCP	IPR005333	-	-
Sma3	Transcription factor TCP subgroup	IPR017887	-	-
Sma3	CYC/TB1, R domain	IPR017888	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q93V43

Fln msg: Distance to subject end: 296 aas, your sequence is shorter than subject: 97 - 365

Fln protein: MEIKPFWITQDLMWDMADISTVVNGKVNRESTKAEMVAEIPAGRAEHSGFRISSTARDSKGSGADRASGSKDRHTKVLTSKGPRDRRIRLSVGTAVK

Protein Length: 98

Fln nts: ATGGGGACAGAATTAAATCCTGGAGCGTTCTGCAATGAATGGAATCTTAGAAAGCAGGACGAAACAATAGTTTTCAATCCTGACG_-_ATGGAGATAAAACCTTTCTGGATAACTCAAGATTTAATGTGGGATATGGCTGACATATCCACTGTAGTGAATGGAAAAGTTAACAGGGAATCTACAAAAGCAGAGATGGTTGCAGAGATACCGGCTGGGAGGGCAGAACATAGTGGTTTTCGAATTAGTAGCACAGCAAGAGACTCAAAGGGATCGGGGGCTGATCGAGCTTCGGGGAGCAAGGATCGGCATACGAAGGTACTTACCTCAAAAGGACCCAGAGACAGAAGAATAAGATTATCTGTTGGAACAGCTGTCAAG

Fln Alignment:

F7QVD2L01DUZTY___RASGSKDRHTKVLTSKGPRDRRIRLSVGTAVK
Q93V43_______________RASGGKDRHSKVLTSKGPRDRRVRLSVSTALQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain