SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60544

Length: 324 nt

UniGene Fasta

>sp_v3.0_unigene60544
ATGGGGGAAGCTGAGAGACCTCAAGAGTGCTCGCAATTTGACAGTGCATAGTGTTGTGAAATGGCTTGATAAACAGTTGGATAAGCATCCTAATTTGAGGGTTTTCATGAGAACCGTATCACCTCGGCACTTCTTTAATGGGGATTGGAACTCGGGCGGTCGTTGCGATAACACCAAACTGTTGTCTGCAATTCACAATGGTTCTCGCAACCGAGCAAATTATCTTTCTGTTGAGAGTGCTGTTCAGGGCACAAGAGTTGAGAATTTAGATATCACTGGGATTTCAGAGTTAAGGGATGATGCACATCTATCCAGATACAGTCT

Ace file of the UniGene sp_v3.0_unigene60544

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF231 domain containing protein	-	-	4.0e-24	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%

Source	Gene names
Sma3	At5g64020; LOC_Os11g13800; LOC_Os12g36750; OJ1655_B12.16; Os09g0397400; Os11g0241900; Os12g0516800; Os12g0554100; OsI_31279; OsI_35655; OsI_38679; OsJ_29266; OsJ_33493; OsJ_36292; OsJ_36458; POPTRDRAFT_217187; POPTRDRAFT_580999; POPTRDRAFT_863068; RCOM_07

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR004253	-	0.0	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G64020.1	TBL14 TRICHOME BIREFRINGENCE-LIKE 14 chr5:25620534-25622034 REVERSE LENGTH=408	1.0e-32	54%
RefSeq	Arabidopsis thaliana	NP_201207.2	protein trichome bi	1.0e-32	54%
RefSeq	Populus trichocarpa	XP_002307039.1	predicted protein, partial [Populus trichocarpa]	1.0e-34	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUP3

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 107 - 390

Fln protein: WGKLRDLKSARNLTVHSVVKWLDKQLDKHPNLRVFMRTVSPRHFFNGDWNSGGRCDNTKLLSAIHNGSRNRANYLSVESAVQGTRVENLDITGISELRDDAHLSRYS

Protein Length: 108

Fln nts: ATGGGGGAAGCTGAGAGACCTCAAGAGTGCTCGCAATTTGACAGTGCATAGTGTTGTGAAATGGCTTGATAAACAGTTGGATAAGCATCCTAATTTGAGGGTTTTCATGAGAACCGTATCACCTCGGCACTTCTTTAATGGGGATTGGAACTCGGGCGGTCGTTGCGATAACACCAAACTGTTGTCTGCAATTCACAATGGTTCTCGCAACCGAGCAAATTATCTTTCTGTTGAGAGTGCTGTTCAGGGCACAAGAGTTGAGAATTTAGATATCACTGGGATTTCAGAGTTAAGGGATGATGCACATCTATCCAGATACAGTCT

Fln Alignment:

F7QVD2L01D0G4J___LRDLKSARNLTVHSVVKWLDKQLDKHPNLRVFMRTVSPRHFFNGDWNSGGRCDNTKLLSAIHNGSRNRANYLSVESAVQGTRVENLDITGISELRDDAHLSRYS
A9NUP3_______________LRDLKSARNLTVHSVVKWLDEQFDKYPNLRVFMRTLSPRHFFNGDWNSGGRCDNTKLLFGSHNVSHN--NDPAAESAVQGTRVEYLDITGISELRDDAHLSKYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain