SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60535

Length: 328 nt

UniGene Fasta

>sp_v3.0_unigene60535
ATGGGGGGAGGTCGAGGCAGATACAATGTGGAGAAGAGGAGCAGCCAAACTTGAAGCCCTAGTGGCCTCCGCGGTTAAACAGCGCGGATCAGTTCCTCATAGATGCGGCGGCCATTGCTGCAGCAGGGCCTCGTCATCGTTCATTCATTCTTACGCGGCTCCTTTTTCTAGAACGTCCCCTCTATCAGCCCATGCTGGAGACGGCGAGAAACTGCTGAAGAAGGAGAAATCAGTGGAACCAAGGAAGCACCTGCTATTGTAGAATCCTATTTTGACAAGCGAATAGTTGGCTGCCCTGGAGGAGCTGGTGAGGAGGAGCATGATGTAA

Ace file of the UniGene sp_v3.0_unigene60535

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cytochrome c oxidase subunit Vb [Arabidopsis thaliana] gb\|AEE75707.1\| cytochrome c oxidase subunit Vb [Arabidopsis thaliana]	-	-	5.0e-09	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Sma3	Cytochrome c oxidase subunit Vb	-	-	3.386e-08	-

Source	Gene names
Sma3	At1g80230; At3g15640; F18B13.29; GSVIVT00032608001; GSVIVT00034556001; Os01g0612200; Os06g0142700; OsI_02834; OsI_21590; OsJ_02582; OsJ_20088; P0046B10.19; P0535G04.28; PHYPADRAFT_106802; POPTRDRAFT_548614; RCOM_0897910; VITISV_010832; cox5b; coxVb;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial envelope	GO:0005740	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	cytochrome-c oxidase activity	GO:0004129	Molecular Function	-
Sma3	metal ion binding	GO:0046872	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome c oxidase, subunit Vb	IPR002124	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15640.1	Rubredoxin-like superfamily protein chr3:5299273-5301371 FORWARD LENGTH=176	3.0e-13	87%
RefSeq	Arabidopsis thaliana	NP_001078161.1	cytochrome c oxidase subunit Vb [Arabidopsis thaliana]	3.0e-13	87%
RefSeq	Populus trichocarpa	XP_002299612.1	predicted protein [Populus trichocarpa]	3.0e-12	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSR3

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 36 aas, your sequence is shorter than subject: 101 - 171

Fln protein: MWRRGAAKLEALVASAVKQRGSVPHRCGGHCCSRASSSFIHSYAAPFSRTSPLSAHAGDGEKLLKKEKSxxxKEAPAIVESYFDKRIVGCPGGAGEEEHDV

Protein Length: 102

Fln nts: ATGGGGGGAGGTCGAGGCAGATACA_-_ATGTGGAGAAGAGGAGCAGCCAAACTTGAAGCCCTAGTGGCCTCCGCGGTTAAACAGCGCGGATCAGTTCCTCATAGATGCGGCGGCCATTGCTGCAGCAGGGCCTCGTCATCGTTCATTCATTCTTACGCGGCTCCTTTTTCTAGAACGTCCCCTCTATCAGCCCATGCTGGAGACGGCGAGAAACTGCTGAAGAAGGAGAAATCAxxxxxxxxxAAGGAAGCACCTGCTATTGTAGAATCCTATTTTGACAAGCGAATAGTTGGCTGCCCTGGAGGAGCTGGTGAGGAGGAGCATGATGTAA

Fln Alignment:

F7QVD2L01BNCA0___MWRRGAAKLEALVASAVKQRGSVPHRCGGHCCSRASSSFIHSYAAPFSRTSPLSAHAGDGEKLLKKEKSVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTKEAPAIVESYFDKRIVGCPGGAGEEEHDV
A9NSR3_______________MWRRGATRLEALVASALKQRASVPHRCGGHCCSRASSSFLHSYAAPFSKTAPLSAQSGDGEKLLKKEKQVExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTKEAPAIVESYFDKRIVGCPGGAGEEEHDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain