SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60527

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene60527
ACTAGATGGATGTCAAGACAACATTCTTGAATGGGGTGATAGAAGAAGAGGTATATATAGAACAACCAGAAGGCTTCGAAACTCATGAAAAGAGAACCCATATATGTAGGTTAAAGAAAGCCCTGTATGGGCTCAAGCAGGCACTTAGAGCATGGTATGGTCAGATTGGTAGTTGCTTGCAGCAGTTGAGATTTGTCAAGAGTGATGCTGATCCCTATCTCTACTATCTAATGGTGGAGAATA

Ace file of the UniGene sp_v3.0_unigene60527

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=4 Tax=Ginkgo biloba RepID=Q06290_GINBI	-	-	1.0e-23	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Sma3	Reverse transcriptase	-	-	3.346e-25	-

Source	Gene names
Sma3	At2g17490; B1248C03.12; LOC_Os03g01684; LOC_Os03g13260; LOC_Os03g26290; LOC_Os03g61660; LOC_Os03g63124; LOC_Os10g01750; LOC_Os11g40860; LOC_Os12g05520; LOC_Os12g44200; OSJNBa0009C08.22; OSJNBa0013O08.17; OSJNBa0049D13.12; OSJNBa0053E05.7; OSJNBa0065H03.10

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 193 aas, your sequence is shorter than subject: 80 - 363

Fln protein: *MDVKTTFLNGVIEEEVYIEQPEGFETHEKRTHICRLKKALYGLKQALRAWYGQIGSCLQQLRFVKSDADPYLYYLMVEN

Protein Length: 81

Fln nts: ACTAGATGGATGTCAAGACAACATTCTTGAATGGGGTGATAGAAGAAGAGGTATATATAGAACAACCAGAAGGCTTCGAAACTCATGAAAAGAGAACCCATATATGTAGGTTAAAGAAAGCCCTGTATGGGCTCAAGCAGGCACTTAGAGCATGGTATGGTCAGATTGGTAGTTGCTTGCAGCAGTTGAGATTTGTCAAGAGTGATGCTGATCCCTATCTCTACTATCTAATGGTGGAGAATA

Fln Alignment:

F7QVD2L01E34XQ___MDVKTTFLNGVIEEEVYIEQPEGFETHEKRTHICRLKKALYGLKQALRAWYGQIGSCLQQLRFVKSDADPYLY
B8LKV8_______________MDVKSAFLNGYLEEEVYVQQPPRYEVRGQEDKVYRLKKALNGLKQAPRAWYSKIDSYMIKNEFIRSTSEPTLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain