SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60525

Length: 207 nt

UniGene Fasta

>sp_v3.0_unigene60525
ATGGGGAATATCGCTGAGCATGAGTTCAACTTATCATCCCCAAACATATGGTCAAAGTTAGGTCGTGAATAAGTGCTTGGAAACATATCTTTGTTGCTTGTCACTGATAAACAAAATAAGTGGACTCAGTGGCCACACTTGGCAGAATGGTGGTAGAACACCACCTACCATACGTCAGCTAAAATGACACCTTTCCAAGCACTCTAT

Ace file of the UniGene sp_v3.0_unigene60525

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	2.0e-12	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	62%

Source	Gene names
Sma3	LOC_Os10g28310; Os05g0456700; Os10g0419000;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AVY5

Fln msg: Overlapping hits, possible frame ERROR between 100 and 97, Distance to subject end: 170 aas, your sequence is shorter than subject: 69 - 1412

Fln protein: WGISLSMSSTYHPQTYGQS*VVNKCLETYLCxxxTDKQNKWTQWPHLAEWW*NTTYHTSAKMTPFQALY

Protein Length: 70

Fln nts: ATGGGGAATATCGCTGAGCATGAGTTCAACTTATCATCCCCAAACATATGGTCAAAGTTAGGTCGTGAATAAGTGCTTGGAAACATATCTTTGTxxxxxxxxxACTGATAAACAAAATAAGTGGACTCAGTGGCCACACTTGGCAGAATGGTGGTAGAACACCACCTACCATACGTCAGCTAAAATGACACCTTTCCAAGCACTCTAT

Fln Alignment:

F7QVD2L01D56JC___GISLSMSSTYHPQTYGQS*VVNKCLETYLCCxVTDKQNKWTQWPHLAEWW*NTTYHTSAKMTPFQALY
A5AVY5_______________GVSLQLSTAYHPQTDGQTEVVNRCIETYLRCxVGDNPGQWANWISLAEFWYNTSYHSSLKMSPFEALY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain