SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60506

Length: 195 nt

UniGene Fasta

>sp_v3.0_unigene60506
AGGTGACTAACCACGGTGTGGAGGAATCCTTGATAAGTGAAGTGATGAGAGTGGCCGCTGAGTTCTTCGAGCTGCCCGTGGAAGAAAGGAACAAATTTGTTTCAGAGGACATGATGAAGGCAGTGAGATACGGCACCAGTTTCAATCATCTGAAAGATGGAGTGTTCTGCTGGAGAGATTTCTGAAGCACGATTG

Ace file of the UniGene sp_v3.0_unigene60506

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate ferrous-dependent oxygenase (Fragment) n=9 Tax=Picea RepID=F1C8R3_PICAB	-	-	7.0e-24	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	Gene names
Sma3	At2g36690; GSVIVT00000578001; RCOM_1352440;

Source	GOs	Term	Type	e value	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr2:15379930-15381987 FORWARD LENGTH=366	1.0e-19	58%
RefSeq	Arabidopsis thaliana	NP_181207.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase-like protein [Arabidopsis thaliana]	2.0e-19	58%
RefSeq	Populus trichocarpa	XP_002316410.1	predicted protein [Populus trichocarpa]	3.0e-18	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AE21

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 210 aas, your sequence is shorter than subject: 61 - 357

Fln protein: VTNHGVEESLISEVMRVAAEFFELPVEERNKFVSEDMMKAVRYGTSFNHLKDGVFCWRDF*

Protein Length: 62

Fln nts: AGGTGACTAACCACGGTGTGGAGGAATCCTTGATAAGTGAAGTGATGAGAGTGGCCGCTGAGTTCTTCGAGCTGCCCGTGGAAGAAAGGAACAAATTTGTTTCAGAGGACATGATGAAGGCAGTGAGATACGGCACCAGTTTCAATCATCTGAAAGATGGAGTGTTCTGCTGGAGAGATTTCTGAAGCACGATTG

Fln Alignment:

F7QVD2L01C3FCL___VTNHGVEESLISEVMRVAAEFFELPVEERNKFVSEDMMKAVRYGTSFNHLKDGVFCWRDF
D5AE21_______________IINHGVKETIMKSMMGIAKEFFEMPVENRACFYSEDPMQPVRVSTSFNICKEKVQHWRDY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain