SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60492

Length: 320 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene60492
TCCAAAGGAATCAGACCTTCACGCAGTCAAAATAATTTTCAAGTATCTTCAAGGAACTCAAGACTTTGGACTATGGTATCCTAGAGATGTAGATCTTACTCTTCATGCATATATAGATGCAGATTGTGCAAGAAGTGTTGATGATAGAAAAAGCACTAGTGGTGGTGCATTCCATATGGGTTCCAGGTTAGTGTCGTGGTTCAACAAGAAACAAAGTATAATTGCTTTATCTACAACTGAAGAAGAATATGTGGTTGTTGCATCTTGCTGCACACAACTACTTTGGATGATGAAAAATTTGCAAGACATTCAGATCCCAT

Ace file of the UniGene sp_v3.0_unigene60492 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH	-	-	1.0e-24	55%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	37%
Sma3	Putative polyprotein	-	-	4.435e-11	-

Source	Gene names
Sma3	LOC_Os03g12600; LOC_Os03g16530; LOC_Os03g28010; LOC_Os03g33940; LOC_Os03g44470; LOC_Os10g01020; LOC_Os10g01600; LOC_Os10g20660; LOC_Os10g22030; LOC_Os10g32124; LOC_Os11g02880; MtrDRAFT_AC147431g15v2; MtrDRAFT_AC149577g2v1; MtrDRAFT_AC169177g29v1; OJ1136E0

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Distance to subject end: 31 aas, your sequence is shorter than subject: 106 - 542

Fln protein: PKESDLHAVKIIFKYLQGTQDFGLWYPRDVDLTLHAYIDADCARSVDDRKSTSGGAFHMGSRLVSWFNKKQSIIALSTTEEEYVVVASCCTQLLWMMKNLQDIQIP

Protein Length: 107

Fln nts: TCCAAAGGAATCAGACCTTCACGCAGTCAAAATAATTTTCAAGTATCTTCAAGGAACTCAAGACTTTGGACTATGGTATCCTAGAGATGTAGATCTTACTCTTCATGCATATATAGATGCAGATTGTGCAAGAAGTGTTGATGATAGAAAAAGCACTAGTGGTGGTGCATTCCATATGGGTTCCAGGTTAGTGTCGTGGTTCAACAAGAAACAAAGTATAATTGCTTTATCTACAACTGAAGAAGAATATGTGGTTGTTGCATCTTGCTGCACACAACTACTTTGGATGATGAAAAATTTGCAAGACATTCAGATCCCAT

Fln Alignment:

F7QVD2L01BHFRI___VKIIFKYLQGTQDFGLWYPR----DVDLTLHAYIDADCARSVDDRKSTSGGAFHMGSRLVSWFNKKQSIIALSTTEEEYVVVASCCTQLLWMMK
Q9M5J7_______________VKRVFRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain