SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60483

Length: 400 nt

UniGene Fasta

>sp_v3.0_unigene60483
ACATGGGTGGTTTATTCTCGTCTAATTTATGCAAATTTTCAATTATGTTTAGACAATACAGTACCTTTACAGAAATGGCAGGTCGAGGACACATGCCACGATCACATGCAAGACACCCAGGCGATGGTTCCATACCTTTTTGGTCCAGCTATGCGTCATCCTTTAGGTGCCTCCTATTGAGCTTCTGGAATGGAGATTGGCCGGTCAACCCGTAGAGTTACAAAGGCTTGCGATGGATAACCAGAGGCTGGGTGCAACATGTGTAGCTCTAAGNGAGGAACTTGCTGGTACCCAGCAAGAGTTGCAGAGAATGCATGCTCAGATGGCAGCCATTCAGGGCGACAAGGAGCAGCAACTTAGAGGCTTGATTGACAAAACAACAAAGATGGAAGCTGAACTT

Ace file of the UniGene sp_v3.0_unigene60483

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	Gene names
Sma3	RCOM_1167770;

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67170.1	" unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryote	3.0e-18	47%
RefSeq	Arabidopsis thaliana	NP_176888.2	uncharacterized protein [Arabidopsis thaliana]	4.0e-18	47%
RefSeq	Populus trichocarpa	XP_002329255.1	predicted protein [Populus trichocarpa]	8.0e-18	50%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKB6

Fln msg: Distance to subject end: 245 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 78 - 356

Fln protein: VPPIELLEWRLAGQPVELQRLAMDNQRLGATCVALREELAGTQQELQRMHAQMAAIQGDKEQQLRGLIDKTTKMEAEL

Protein Length: 79

Fln nts: ACATGGGTGGTTTATTCTCGTCTAATTTATGCAAATTTTCAATTATGTTTAGACAATACAGTACCTTTACAGAAATGGCAGGTCGAGGACACATGCCACGATCACATGCAAGACACCCAGGCGATGGTTCCATACCTTTTTGGTCCAGCTATGCGTCATCCTTTAGGTGCCTCCTATTGAGCTTCTGGAATGGAGATTGGCCGGTCAACCCGTAGAGTTACAAAGGCTTGCGATGGATAACCAGAGGCTGGGTGCAACATGTGTAGCTCTAAGaGAGGAACTTGCTGGTACCCAGCAAGAGTTGCAGAGAATGCATGCTCAGATGGCAGCCATTCAGGGCGACAAGGAGCAGCAACTTAGAGGCTTGATTGACAAAACAACAAAGATGGAAGCTGAACTT

Fln Alignment:

F7QVD2L01DHWUA___VPPIELLEWRLAGQPVELQRLAMDNQRLGATCVALREELAGTQQELQRMHAQMAAIQGDKEQQLRGLIDKTTKMEAE
A9NKB6_______________LPPIELLDRRLAAQHEELLRLAMDNRRLGATHVALREELAGAQQELQR----MAAILGDKEQQVRGLIDKTTKMEAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain