SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60475

Length: 456 nt

UniGene Fasta

>sp_v3.0_unigene60475
ATGGGGGAGGTTAACAGCACCAGCTCTTCTCTTCTCAACATGATCGCCCGCTTCGATCTCCATTTCGGTTTTGCGTGGTGCCATTGGGTTTACATTCGTCAATACCTGCAATCTGGAGACAGGGAGAGGGAGGGAGGATGAAGGAAGAGCATTGATGTGCAGTTTCAGAGATTGTTTCTGTGAAAAGAGACCATCGCGGAAGCATTCGATTTCAATGCTGGAAGATTGTTTGCAATGTCGACCAAATTCGAGTCCCAGAGTAACTGGGTAAAGGGGTTGAGCTTTTATACGAAACGGCCATGGATCCTGGCCAGTCTTCACAGTGGGGTTATTCAGTTATGGCATTATCAGATGGGAACACTGATAGATTTGATGAGCATGATGGGCCGGTTAGAGGAGTACATTTTCACAAGGCTCAGCCGTGTTTGTGTCTGGAGGTAAGCGAATCGGCTTGAG

Ace file of the UniGene sp_v3.0_unigene60475

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coatomer alpha subunit-like protein [Lotus japonicus]	-	-	1.0e-14	84%
FL-Next	sp=Coatomer subunit alpha-1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%
Sma3	Coatomer subunit alpha-2	-	-	2.364e-08	-

Source	Gene names
Sma3	615K1.1; At1g62020; At2g21390; CHLREDRAFT_195437; COP1; COPA1; F3K23.15; F8K4.21; GSVIVT00004553001; GSVIVT00004883001; GSVIVT00014508001; LOC_Os03g50340; LOC_Os03g50350; LOC_Os09g04110; MICPUCDRAFT_45432; MICPUN_106869; OSJNBb0033N16.10; OSJNBb0033N16.11

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane coat	GO:0030117	Cellular Component	-
Sma3	COPI vesicle coat	GO:0030126	Cellular Component	-
Sma3	structural molecule activity	GO:0005198	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G62020.1	Coatomer, alpha subunit chr1:22919814-22923728 FORWARD LENGTH=1216	3.0e-17	82%
RefSeq	Arabidopsis thaliana	NP_176393.1	coatomer subunit alpha-1 [Arabidopsis thaliana]	4.0e-17	82%
RefSeq	Populus trichocarpa	XP_002321558.1	predicted protein [Populus trichocarpa]	2.0e-17	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q94A40

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 1142 aas, your sequence is shorter than subject: 69 - 1216

Fln protein: MSTKFESQSNWVKGLSFYTKRPWILASLHSGVIQLWHYQMGTLIDLMSMMGRLEEYIFTRLSRVCVWR*

Protein Length: 70

Fln nts: ATGGGGGAGGTTAACAGCACCAGCTCTTCTCTTCTCAACATGATCGCCCGCTTCGATCTCCATTTCGGTTTTGCGTGGTGCCATTGGGTTTACATTCGTCAATACCTGCAATCTGGAGACAGGGAGAGGGAGGGAGGATGAAGGAAGAGCATTGATGTGCAGTTTCAGAGATTGTTTCTGTGAAAAGAGACCATCGCGGAAGCATTCGATTTCAATGCTGGAAGATTGTTTGCA_-_ATGTCGACCAAATTCGAGTCCCAGAGTAACTGGGTAAAGGGGTTGAGCTTTTATACGAAACGGCCATGGATCCTGGCCAGTCTTCACAGTGGGGTTATTCAGTTATGGCATTATCAGATGGGAACACTGATAGATTTGATGAGCATGATGGGCCGGTTAGAGGAGTACATTTTCACAAGGCTCAGCCGTGTTTGTGTCTGGAGGTAAGCGAATCGGCTTGAG

Fln Alignment:

F7QVD2L01B301M___MSTKFESQSNWVKGLSFYTKRPWILASLHSGVIQLWHYQMGTLID
Q94A40_______________MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLID

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain