SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60422

Length: 431 nt

UniGene Fasta

>sp_v3.0_unigene60422
CTTACAGCAATGCAGACAGAGATATGTATGCTCATCTTCTGCACAAATGTGCCAACATTAAATCCCTAGCAGAGGGAAAGCAGATTCATACTCATCTCGTCAAGACAGCTCTTCAGCAAGACGTATTTCTAGGAAATCACCTCATAAACATGTATTCTAAGTGCGGGGTAATGGAGGAAGCATGCAATTTTTTGGCAAAATACATCAGCCAAATGTCCTCTCTTGGAATACTATGATTTCAGGGTTCACCTACTCCACTGTTCTTACTTGGTGTGCTAACTCGCCAACGTTTGAACAGGGCAAGCAGATCCATTCACAGGATTTGCCAGATGCGGAAGAATTCAAGACGCACGCCGAGTGTTCAACGAAATGCCTGTAAAGAGCGATGTCTCATGGAGTGCCATGATCGCAGGATATGCGCAGAATGGCAA

Ace file of the UniGene sp_v3.0_unigene60422

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 43 n=1 Tax=Funaria hygrometrica RepID=F5CAD7_FUNHY	-	-	2.0e-19	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68930.1	pentatricopeptide (PPR) repeat-containing protein chr1:25918314-25920545 FORWARD LENGTH=743	1.0e-16	52%
RefSeq	Arabidopsis thaliana	NP_177059.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-16	52%
RefSeq	Populus trichocarpa	XP_002319164.1	predicted protein [Populus trichocarpa]	5.0e-20	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN6

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 99 aas, your sequence is shorter than subject: 143 - 394

Fln protein: YSNADRDMYAHLLHKCANIKSLAEGKQIHTHLVKTALQQDVFLGNHLINMYSKCGVMEExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFARCGRIQDARRVFNEMPVKSDVSWSAMIAGYAQNG

Protein Length: 144

Fln nts: CTTACAGCAATGCAGACAGAGATATGTATGCTCATCTTCTGCACAAATGTGCCAACATTAAATCCCTAGCAGAGGGAAAGCAGATTCATACTCATCTCGTCAAGACAGCTCTTCAGCAAGACGTATTTCTAGGAAATCACCTCATAAACATGTATTCTAAGTGCGGGGTAATGGAGGAAGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTTGCCAGATGCGGAAGAATTCAAGACGCACGCCGAGTGTTCAACGAAATGCCTGTAAAGAGCGATGTCTCATGGAGTGCCATGATCGCAGGATATGCGCAGAATGGCAA

Fln Alignment:

F7QVD2L01DDMDH___SNADRDMYAHLLHKCANIKSLAEGKQIHTHLVKTALQQDVFLGNHLINMYSKCGVMEEAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFARCGRIQDARRVFNEMPVKSDVSWSAMIAGYAQNG
B8LKN6_______________TNPDNYTYSSVLNACARLASLSEGKLIYDEIISKGCEMDVIVENALINMFMKCGSIEDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain