SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60333

Length: 392 nt

UniGene Fasta

>sp_v3.0_unigene60333
TTGGTTGATTTGCTTGACTTTGCTTTAGCAGCAGACACTGAAAATACTGTGAAAACCACGCGAGAGATTATTGATTCTGGAATTCAACCAATTGCCATTGTTTCACAACTAGCAGCACTCATCACGGACATTCTGGGCAGTGGTTGCATTTCTGCAGAGTCGCAAGAAACCGAAAAGTTCTTCGGTAGTCATCACTCCTCCAATGCTGTAATAGAGAAGTTAGGCCAAGGTCTGAAAATTCTTGTAGAAGCAGAGAAACAACTAAGGGCTTCAAATGAGAGCACTTCATGGCTTACAGCTGCTCTTCTGCAGTTTGGAATAGATGAGTCCAACCCAAGTCCTCGTTCACCTGTGGTATTAATGTAGCCTTTGATGATTTAAGTAACAAGAAG

Ace file of the UniGene sp_v3.0_unigene60333

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	50%

Source	Gene names
Sma3	AT4g18820; At5g45720; F28A21.230; GSVIVT00015918001; GSVIVT00035826001; LOC_Os12g19180; OJ1131_E09.4; OJ1187_E11.19; Os05g0529600; OsI_03625; OsI_20723; OsI_38032; OsJ_12890; OsJ_19296; OsJ_35804; PHYPADRAFT_112792; PHYPADRAFT_1129; PHYPADRAFT_229978; POP

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA polymerase III complex	GO:0009360	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA polymerase III, delta	IPR010372	-	-
Sma3	DNA polymerase III, subunit gamma/ tau	IPR012763	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G45720.1	AAA-type ATPase family protein chr5:18543338-18546629 REVERSE LENGTH=966	3.0e-21	48%
RefSeq	Arabidopsis thaliana	NP_199384.2	AAA-type ATPase family protein [Arabidopsis thaliana]	4.0e-21	48%
RefSeq	Populus trichocarpa	XP_002317391.1	predicted protein [Populus trichocarpa]	2.0e-21	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8A913

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 326 aas, your sequence is shorter than subject: 122 - 815

Fln protein: LVDLLDFALAADTENTVKTTREIIDSGIQPIAIVSQLAALITDILGSGCISAESQETEKFFGSHHSSNAVIEKLGQGLKILVEAEKQLRASNESTSWLTAALLQFGIDESNPSPRSPVVLM*

Protein Length: 123

Fln nts: TTGGTTGATTTGCTTGACTTTGCTTTAGCAGCAGACACTGAAAATACTGTGAAAACCACGCGAGAGATTATTGATTCTGGAATTCAACCAATTGCCATTGTTTCACAACTAGCAGCACTCATCACGGACATTCTGGGCAGTGGTTGCATTTCTGCAGAGTCGCAAGAAACCGAAAAGTTCTTCGGTAGTCATCACTCCTCCAATGCTGTAATAGAGAAGTTAGGCCAAGGTCTGAAAATTCTTGTAGAAGCAGAGAAACAACTAAGGGCTTCAAATGAGAGCACTTCATGGCTTACAGCTGCTCTTCTGCAGTTTGGAATAGATGAGTCCAACCCAAGTCCTCGTTCACCTGTGGTATTAATGTAGCCTTTGATGATTTAAGTAACAAGAAG

Fln Alignment:

F7QVD2L01BOLEO___TENTVKTTREIIDSGIQPIAIVSQLAALITDILGSGCISAESQETEKFFGSHHSSNAVIEKLGQGLKILVEAEKQLRASNESTSWLTAALLQFGIDESNPSPRS
B8A913_______________TVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRERLRRKFFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLPSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain