SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60217

Length: 485 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene60217
CTCTTACCCAAGAGGAACAAAATACAATGTTGGATACTTTGCGACAGGCTACTCGAAATACAATGTTTGATGAATGGTTGAATGCATGGTGGAAAGAATGTCCAAAAGCTACCACTCAATCACAATCTGTGTTAGAGGACCAGTCTGTGCCTCCTTCAGGTACAGCAGAGTCATTGCAAATTGTGGCAGATTACCTATCTAAGATTGACCACAATACATCTAATTCAAGTGTGGAGATGCCAGGAAAATCGAACTGCTTTACTGTAACAGACACTTCTGACAAGAAAGAATTCACATTTGGAAACAGTCTGCAAGACAGTGACTTGAAAAGTCTTAATGGAACTTCAGTTGATAAATGGAAACATGCAGGGTGTACTGTTGCTCCCTCCAGTAATGATGAAAACACACTCTGAAAATGGATGCCATTCAGGATATCCAAGAGCAGGTTGAACAAGACAGTCAAAATTTCAAGCCTGGGTGGAAGG

Ace file of the UniGene sp_v3.0_unigene60217 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5N7K2_ORYSJ	-	-	3.0e-09	64%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	50%

Source	Gene names
Sma3	Os01g0689300; OsI_03330; OsJ_03068; P0519D04.45;

Source	GOs	Term	Type	e value	Identity
Sma3	protein binding	GO:0005515	Molecular Function	0.0	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Haemerythrin/HHE cation-binding motif	IPR012312	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8R7Y8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 222 aas, your sequence is shorter than subject: 137 - 1144

Fln protein: LTQEEQNTMLDTLRQATRNTMFDEWLNAWWKECPKATTQSQSVLEDQSVPPSGTAESLQIVADYLSKIDHNTSNSSVEMPGKSNCFTVTDTSDKKEFTFGNSLQDSDLKSLNGTSVDKWKHAGCTVAPSSNDENTL*

Protein Length: 138

Fln nts: CTCTTACCCAAGAGGAACAAAATACAATGTTGGATACTTTGCGACAGGCTACTCGAAATACAATGTTTGATGAATGGTTGAATGCATGGTGGAAAGAATGTCCAAAAGCTACCACTCAATCACAATCTGTGTTAGAGGACCAGTCTGTGCCTCCTTCAGGTACAGCAGAGTCATTGCAAATTGTGGCAGATTACCTATCTAAGATTGACCACAATACATCTAATTCAAGTGTGGAGATGCCAGGAAAATCGAACTGCTTTACTGTAACAGACACTTCTGACAAGAAAGAATTCACATTTGGAAACAGTCTGCAAGACAGTGACTTGAAAAGTCTTAATGGAACTTCAGTTGATAAATGGAAACATGCAGGGTGTACTGTTGCTCCCTCCAGTAATGATGAAAACACACTCTGAAAATGGATGCCATTCAGGATATCCAAGAGCAGGTTGAACAAGACAGTCAAAATTTCAAGCCTGGGTGGAAGG

Fln Alignment:

F7QVD2L01DLIOK___LTQEEQNTMLDTLRQATRNTMFDEWLNAWWKECP-KATTQSQSVLEDQSVPPSGTAESLQI
D8R7Y8_______________LTDGEQTGMMESWRQATKNTMFDKWLSAWWGDSSLKSSPSSPPATRDPSTPPSGSSESLQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain