SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60129

Length: 316 nt

UniGene Fasta

>sp_v3.0_unigene60129
ATGGGGTTGGAAGGTTTCAGGCAAATCCAAAGGAAACTCATCTTCAGGCAGTTAAGAGAATTTCAAGTATCTTCAAAGAACTCAAAACTATGGCTTATGGTATCCTAGAGGTACAGATCTTACACTTCATGCATATACAGATGTAGATTGGGCAGGAAGCGTGGATGACAGGAAAACNCTACTGGTGGTGCATTCTTCTTGGGTCCTAGATTAGTATCTTGGTTCAACAAGAAACAAAGTTCCATTGCATTATCTACAGCTGAAGCTGAATATGTGGCTGCTGCATCTTGCTGCACACAACTCCTTTGGATGATGC

Ace file of the UniGene sp_v3.0_unigene60129

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag/pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9C5V1_ARATH	-	-	4.0e-21	56%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	38%
Sma3	Retrotransposon protein, putative, unclassified	-	-	3.115e-07	-

Source	Gene names
Sma3	H0321H01.1; LOC_Os03g37210; LOC_Os10g01600; LOC_Os11g02880; LOC_Os11g19610; LOC_Os11g31680; LOC_Os12g24610; MtrDRAFT_AC169177g29v1; OSIGBa0140A01.8; OSIGBa0142C11.4; OSJNBa0004B24.21; OSJNBa0069D17.3; OSJNBa0071K19.17; VITISV_025745;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 71 - 542

Fln protein: WGWKVSGKSKGNSSSGS*ENFKYLQRTQNYGLWYPRGTDLTLHAYTDVDWAGSVDDRKTLLVVHSSWVLD*

Protein Length: 72

Fln nts: ATGGGGTTGGAAGGTTTCAGGCAAATCCAAAGGAAACTCATCTTCAGGCAGTTAAGAGAATTTCAAGTATCTTCAAAGAACTCAAAACTATGGCTTATGGTATCCTAGAGGTACAGATCTTACACTTCATGCATATACAGATGTAGATTGGGCAGGAAGCGTGGATGACAGGAAAACaCTACTGGTGGTGCATTCTTCTTGGGTCCTAGATTAGTATCTTGGTTCAACAAGAAACAAAGTTCCATTGCATTATCTACAGCTGAAGCTGAATATGTGGCTGCTGCATCTTGCTGCACACAACTCCTTTGGATGATGC

Fln Alignment:

F7JJN6E01BRWDF___FKYLQRTQNYGLWYPRGTDLT----LHAYTDVDWAGSVD
Q9M5J7_______________FRYLHGTTSYGLCYQGRSGLDRVVDIHGFVDADWVGDLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain