SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60107

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene60107
ATGGGGAGTTCAACACTATGGTTATGAGTTCATGTATAAAACACGGAATGTTGACACAAAGCAATACCTGGGCCAGCTGCCAGTGTTTTTGTCGGGATTGCTAAAGAGAATGGCATTACTTCCAGAGGTTAATCAGGCAGAAAATTCTCTGCCACTTGACCAGTTAACGGTAAATGAATATCCTGCTGGA

Ace file of the UniGene sp_v3.0_unigene60107

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Oxidoreductase; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	65%

Source	Gene names
Sma3	At1g31600; F27M3_19; GSVIVT00001208001; PHYPADRAFT_15669; POPTRDRAFT_414000; RCOM_0867260; VITISV_021238;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	Rho guanyl-nucleotide exchange factor activity	GO:0005089	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Plant specific Rop nucleotide exchanger, PRONE	IPR005512	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G31600.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr1:11313376-11315199 REVERSE LENGTH=431	4.0e-20	63%
RefSeq	Arabidopsis thaliana	NP_973945.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	2.0e-20	63%
RefSeq	Populus trichocarpa	XP_002304398.1	predicted protein, partial [Populus trichocarpa]	9.0e-20	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7KKB6

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 63 - 344

Fln protein: WGVQHYGYEFMYKTRNVDTKQYLGQLPVFLSGLLKRMALLPEVNQAENSLPLDQLTVNEYPAG

Protein Length: 64

Fln nts: ATGGGGAGTTCAACACTATGGTTATGAGTTCATGTATAAAACACGGAATGTTGACACAAAGCAATACCTGGGCCAGCTGCCAGTGTTTTTGTCGGGATTGCTAAAGAGAATGGCATTACTTCCAGAGGTTAATCAGGCAGAAAATTCTCTGCCACTTGACCAGTTAACGGTAAATGAATATCCTGCTGGA

Fln Alignment:

F7JJN6E01BML2F___VQHYGYEFMYKTRNVDTKQYLGQLPVFLSGLLKRMALLPEVNQAENSLPLDQLTVNEYPAG
D7KKB6_______________VQHYGYEFCYGTRNVDTKKRLGELPSFVSPILERMSLFPNFDINSASLDLDQLTVNEYPSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain