SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60062

Length: 279 nt

UniGene Fasta

>sp_v3.0_unigene60062
CTGGGGCGTAGAACGTAGCAGTGCAATTGCATATAGAAGCCAGGAAGCAATTCCCCTCTGAAAGGATCTGGATCACTAATGAAATTAAAATACACAATCCCACAGTGAATGAGAGATTGGAGAATGGATGTCCATTCTATTCCTATAGGAAATGAAGGAAACGATTTGATGTTGTTAACAAGGGAGACGTGGTGATTTTGCCCGCATTTGGAGCATCTGTACATGAAATGCAGTTGTTAAGTGAGAAAAATGTACAGATTGTAGACACAACCTGTCCGT

Ace file of the UniGene sp_v3.0_unigene60062

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Type 2 1-hydroxy-2-methyl-2-(E)-butenyl-4-phosphate reductase n=3 Tax=Pinaceae RepID=A9P332_PINTA	-	-	3.0e-28	78%
FL-Next	tr=Putative 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase type 2; Pinus densiflora (Japanese red pine).	-	-	0.0	79%
Sma3	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-	-	6.977e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	4-hydroxy-3-methylbut-2-enyl diphosphate reductase.	EC:1.17.1.2	-	1.438e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Terpenoid backbone biosynthesis	00900	1.438e-27	%
Sma3	Biosynthesis of terpenoids and steroids	01062	1.438e-27	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	1.438e-27	%
Sma3	Biosynthesis of plant hormones	01070	1.438e-27	%
Sma3	Metabolic pathways	01100	1.438e-27	%
Sma3	Biosynthesis of secondary metabolites	01110	1.438e-27	%

Source	Gene names
Sma3	AT4G34350; AT4g34350; F10M10.120; GSVIVT00036436001; HDR; HbHDR; IDS; IDS1; IDS2; ISPH; IspH; LOC_Os03g52170; LOC_Os03g52210; MICPUCDRAFT_26764; MICPUN_97588; OSJNBa0079G12.14; OSJNBa0079G12.18; OSTLU_32979; Os03g0731900; OsI_13396; OsI_13397; OsJ_12459;

Source	GOs	Term	Type	Identity
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	GO:0046429	Molecular Function	-
Sma3	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	GO:0051745	Molecular Function	-
Sma3	isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0019288	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	LytB protein	IPR003451	-	0.0	-
Sma3	Domain of unknown function DUF1263	IPR010685	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G34350.1	CLB6, ISPH, HDR 4-hydroxy-3-methylbut-2-enyl diphosphate reductase chr4:16428681-16431038 REVERSE LENGTH=466	2.0e-29	65%
RefSeq	Arabidopsis thaliana	NP_567965.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Arabidopsis thaliana]	3.0e-29	65%
RefSeq	Populus trichocarpa	XP_002313816.1	predicted protein [Populus trichocarpa]	3.0e-29	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B9U4V0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 252 aas, your sequence is shorter than subject: 92 - 487

Fln protein: GA*NVAVQLHIEARKQFPSERIWITNEIKIHNPTVNERLENGCPFYSYRK*RKRFDVVNKGDVVILPAFGASVHEMQLLSEKNVQIVDTTCP

Protein Length: 93

Fln nts: CTGGGGCGTAGAACGTAGCAGTGCAATTGCATATAGAAGCCAGGAAGCAATTCCCCTCTGAAAGGATCTGGATCACTAATGAAATTAAAATACACAATCCCACAGTGAATGAGAGATTGGAGAATGGATGTCCATTCTATTCCTATAGGAAATGAAGGAAACGATTTGATGTTGTTAACAAGGGAGACGTGGTGATTTTGCCCGCATTTGGAGCATCTGTACATGAAATGCAGTTGTTAAGTGAGAAAAATGTACAGATTGTAGACACAACCTGTCCGT

Fln Alignment:

F7JJN6E01DST04___AVQLHIEARKQFPSERIWITNEIKIHNPTVNERLE----NGCPFYSYRK*RKRFDVVNKGDVVILPAFGASVHEMQLLSEKNVQIVDTTCP
B9U4V0_______________AVQIAYEARKQFPSERIWITNEI-IHNPTVNERLEEMDVHSIPIGNEGK---RFDVVNKGDVVILPAFGASVHEMQLLSEKNVQIVDTTCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain