SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene60059

Length: 389 nt

UniGene Fasta

>sp_v3.0_unigene60059
TACATGGGCACCCCTGCTGCGGCTTGTTGTCCTTCCATTCGTGGGTTGGACTCACAAGTGAAAGCCACCCCTGATAGGCAGGCTGTTTGCAACTGCCTCAAGACCCAAGCACAGTCATATGGGGTCAAGTTGGGAAAGGCCGCCAATCTGCCGGGCCTGTGCAAGGTCACCGATCTCAACGTGCCTATCTCTCCTAATGTTGACTGTTCCAAGGTTCACTGATAAAGTTTGCTGACGACGGAATTTGGGCTGGTTATCGTAGTTCTATACTATTGGGGCTGTAGTTACTCTACGAACTAATGTGTTTTGTGACAATGGAATCTGGGCTGGTTTCCTAGTTCTATACTATTAGGTATAGGTGCCGACTGTAGTGAGTCGATGGACTAATG

Ace file of the UniGene sp_v3.0_unigene60059

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=2 Tax=Picea sitchensis RepID=A9NKD5_PICSI	-	-	7.0e-34	97%
FL-Next	sp=Non-specific lipid-transfer protein; Pinus sylvestris (Scots pine).	-	-	0.0	100%
Sma3	Nonspecific lipid transfer protein	-	-	5.867e-11	-

Source	Gene names
Sma3	Afp; LTP1;

Source	GOs	Term	Type	e value	Identity
Sma3	lipid binding	GO:0008289	Molecular Function	0.0	-
Sma3	lipid transport	GO:0006869	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3		IPR003612	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002305878.1	predicted protein [Populus trichocarpa]	4.0e-14	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: H9B580

Fln msg: your sequence is shorter than subject: 74 - 123

Fln protein: YMGTPAAACCPSIRGLDSQVKATPDRQAVCNCLKTQAQSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKVH*

Protein Length: 75

Fln nts: TACATGGGCACCCCTGCTGCGGCTTGTTGTCCTTCCATTCGTGGGTTGGACTCACAAGTGAAAGCCACCCCTGATAGGCAGGCTGTTTGCAACTGCCTCAAGACCCAAGCACAGTCATATGGGGTCAAGTTGGGAAAGGCCGCCAATCTGCCGGGCCTGTGCAAGGTCACCGATCTCAACGTGCCTATCTCTCCTAATGTTGACTGTTCCAAGGTTCACTGA___TAAAGTTTGCTGACGACGGAATTTGGGCTGGTTATCGTAGTTCTATACTATTGGGGCTGTAGTTACTCTACGAACTAATGTGTTTTGTGACAATGGAATCTGGGCTGGTTTCCTAGTTCTATACTATTAGGTATAGGTGCCGACTGTAGTGAGTCGATGGACTAATG

Fln Alignment:

F7JJN6E01EOLV6___TPAAACCPSIRGLDSQVKATPDRQAVCNCLKTQAQSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKVH
H9B580_______________TPAAACCPSIRGLDSQVKATPDRQAVCNCLKTQAQSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain