SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59986

Length: 279 nt

UniGene Fasta

>sp_v3.0_unigene59986
ATGGGGCTCTTCGCATCACTTTGGATTGCTAGGGTTTGAGGATTCTTGGCTTCTGAGCATTCGAAATCGTGGTAGCCTGATCCGATCATTTACCCTGTAGAATCCTTGCATCAGATGTTTGTTTTACAGCTCCAGTAAAGCCATGGCAGTTACATTTCCAAATCTGAGCACAGAGGCTGGCCTCAAGCATCTTGATGAATATCTTCTTTCAAGAACTTTTGTAACTGGGCATCAAGCTACAAGAGATGATATTACTGTCTATGGCGCCATTAGCAAAGC

Ace file of the UniGene sp_v3.0_unigene59986

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative elongation factor n=1 Tax=Cryptomeria japonica RepID=Q1XG58_CRYJA	-	-	2.0e-13	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	Gene names
Sma3	eEF1Bbeta;

Source	GOs	Term	Type	Identity
Sma3	eukaryotic translation elongation factor 1 complex	GO:0005853	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EF1B, beta/delta chains, conserved site	IPR001326	-	-
Sma3	Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange	IPR014038	-	-
Sma3	Translation elongation factor EF1B/ribosomal protein S6	IPR014717	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30230.2	" Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 chr1:10639286-10640601 FORWARD LENGTH=260"	1.0e-12	60%
RefSeq	Arabidopsis thaliana	NP_174314.2	elongation factor 1-delta 1 [Arabidopsis thaliana]	1.0e-12	60%
RefSeq	Populus trichocarpa	XP_002321696.1	predicted protein [Populus trichocarpa]	3.0e-12	59%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NML6

Fln msg: Distance to subject end: 181 aas, your sequence is shorter than subject: 45 - 227

Fln protein: MAVTFPNLSTEAGLKHLDEYLLSRTFVTGHQATRDDITVYGAISK

Protein Length: 46

Fln nts: ATGGGGCTCTTCGCATCACTTTGGATTGCTAGGGTTTGAGGATTCTTGGCTTCTGAGCATTCGAAATCGTGGTAGCCTGATCCGATCATTTACCCTGTAGAATCCTTGCATCAGATGTTTGTTTTACAGCTCCAGTAAAGCC_-_ATGGCAGTTACATTTCCAAATCTGAGCACAGAGGCTGGCCTCAAGCATCTTGATGAATATCTTCTTTCAAGAACTTTTGTAACTGGGCATCAAGCTACAAGAGATGATATTACTGTCTATGGCGCCATTAGCAAAGC

Fln Alignment:

F7JJN6E01BIHIU___MAVTFPNLSTEAGLKHLDEYLLSRTFVTGHQATRDDITVYGAISK
A9NML6_______________MAVAFPNLSTEVGLKHLDEYLLSRTFITGHQATRDDIAVYGAISK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain