SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59946

Length: 99 nt

UniGene Fasta

>sp_v3.0_unigene59946
GCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAGGTTCCAAGGCAGCAGCCAAAA

Ace file of the UniGene sp_v3.0_unigene59946

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	EF-1 alpha [Gymnadenia conopsea]	-	-	2.0e-06	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Elongation factor 1-alpha	-	-	5.584e-08	-

Source	Gene names
Sma3	EF-1alpha; EF1; EF1-A; EF1-a1; EF1A; EF1A8; GSVIVT00023150001; GSVIVT00024491001; GSVIVT00024496001; PHYPADRAFT_104509; PHYPADRAFT_158894; PHYPADRAFT_158916; PHYPADRAFT_163704; PHYPADRAFT_174589; PHYPADRAFT_182696; PHYPADRAFT_182704; PHYPADRAFT_210098; PH

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EF1A, eukaryotic/archaeal	IPR004539	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315286.1	predicted protein, partial [Populus trichocarpa]	3.0e-11	81%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P004

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 33 - 113

Fln protein: AVRDMRQTVAVGVIKAVEKKEPSGAKVPRQQPK

Protein Length: 34

Fln nts: GCAGTCAGGGACATGCGTCAGACGGTTGCTGTAGGAGTCATCAAAGCTGTTGAAAAGAAGGAACCTAGTGGTGCAAAGGTTCCAAGGCAGCAGCCAAAA

Fln Alignment:

F7QVD2L01AFIOW___AVRDMRQTVAVGVIKAVEKKEPSGAKVPRQQPK
A9P004_______________AVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain