SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59937

Length: 360 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene59937
GTTGCTATCCTCTCTGCTTGCAATCATGCAGGCTTAGTGGNTAAAGGTCGACAATACTTCAATTGTATGAGTCAGGATTATTGTATCATGCCTAGGATGGAGCACTATGCGTGCATGGCTGACCTTCTTGGTCGCGCGGGCTGTCTTGATGAGGCATATAGCTTTATTGAAAGGATGCCTTTAGAACCGAATGCTGATGTATGGGGGGCTTTGCTTGGTGCGTGCAAGACATATAACAATATAGAGCTAGGAGAAAATGTGGCGGATATCCTATTTAAGTTAAAGCCTGAAGATACAGGATATTATGTACTTCTCTCAAATATCTATGCTGCTGCTGGCCGGTGGGATGATGTAGCGAAG

Ace file of the UniGene sp_v3.0_unigene59937 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	7.0e-39	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	Pentatricopeptide repeat-containing protein, putative	-	-	1.033e-10	-

Source	Gene names
Sma3	At1g08070; At1g17630; At1g20230; At2g01510; At2g13600; At2g22070; At3g12770; At3g29230; At3g49140; At4g02750; At4g18750; At4g33990; At5g04780; At5g06540; At5g09950; At5g15300; At5g39350; At5g40410; At5g48910; B1032F05.19; EMB2758; F15M7.7; F17I5.180; F1L3

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	-
Sma3	deaminase activity	GO:0019239	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	purine ribonucleoside monophosphate biosynthetic process	GO:0009168	Biological Process	-
Sma3	phloem or xylem histogenesis	GO:0010087	Biological Process	-
Sma3	leaf vascular tissue pattern formation	GO:0010305	Biological Process	-
Sma3	cotyledon vascular tissue pattern formation	GO:0010588	Biological Process	-
Sma3	leaf development	GO:0048366	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Zinc finger-XS domain	IPR005381	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02750.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:1221116-1223461 REVERSE LENGTH=781	59%
RefSeq	Arabidopsis thaliana	NP_192184.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002331135.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 120 - 312

Fln protein: VAILSACNHAGLVVKGRQYFNCMSQDYCIMPRMEHYACMADLLGRAGCLDEAYSFIERMPLEPNADVWGALLGACKTYNNIELGENVADILFKLKPEDTGYYVLLSNIYAAAGRWDDVAK

Protein Length: 121

Fln nts: GTTGCTATCCTCTCTGCTTGCAATCATGCAGGCTTAGTGGtTAAAGGTCGACAATACTTCAATTGTATGAGTCAGGATTATTGTATCATGCCTAGGATGGAGCACTATGCGTGCATGGCTGACCTTCTTGGTCGCGCGGGCTGTCTTGATGAGGCATATAGCTTTATTGAAAGGATGCCTTTAGAACCGAATGCTGATGTATGGGGGGCTTTGCTTGGTGCGTGCAAGACATATAACAATATAGAGCTAGGAGAAAATGTGGCGGATATCCTATTTAAGTTAAAGCCTGAAGATACAGGATATTATGTACTTCTCTCAAATATCTATGCTGCTGCTGGCCGGTGGGATGATGTAGCGAAG

Fln Alignment:

F7QVD2L01BG24T___VAILSACNHAGLVVKGRQYFNCMSQDYCIMPRMEHYACMADLLGRAGCLDEAYSFIERMPLEPNADVWGALLGACKTYNNIELGENVADILFKLKPEDTGYYVLLSNIYAAAGRWDDVAK
D5ADG9_______________ISVLSACSHAGLVDEGWKCYNCMTLDYAITPTVEHYACMVDLLGRAGHLNEAWDFIEKMPIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain