SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59836

Length: 276 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene59836
TTTCTGAAATTCGCCACCCTCTCTTGAAAACCAGAGTGTGGCTGGGAACATTTGAGACCGTAGAAGATGCAGCGCGTGCCTATGACGAAGCTGCAATACTGATGTGCGGGCCTCATCATGCAAAAGACCAATTTCACATATGACCCCACTGCACCACCATCTAGCAAGCCTTCTTTTCNGTCTGAAGCACTGGCTGGCAAGCTTCGCCAATGCTATCTGGCTTCTCGCAACATTGAAAATGCAAGAGGGCACTGCTAATAAACATCAGTTGCAGTC

Ace file of the UniGene sp_v3.0_unigene59836 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene-responsive transcription factor ERF003 n=2 Tax=Arabidopsis RepID=ERF03_ARATH	-	-	1.0e-17	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	AP2/ERF domain-containing transcription factor	-	-	1.562e-19	-

Source	Gene names
Sma3	At1g15360; At4g34410; At5g11190; At5g25190; At5g25390; DREB22; DREB23; DREB24; DREB25; DREB26; DREB27; DREB28; DREB29; DREB30; DREB31; EFD; ERF001; ERF003; ERF004; ERF005; ERF1; ERF109; F10M10.180; F18G18.130; F21J6.103; F2I11.80; F9L1.31; GSVIVT000003490

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	cutin biosynthetic process	GO:0010143	Biological Process	-
Sma3	wax metabolic process	GO:0010166	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G25190.1	Integrase-type DNA-binding superfamily protein chr5:8707007-8707655 REVERSE LENGTH=181	4.0e-20	91%
RefSeq	Arabidopsis thaliana	NP_197901.1	ethylene-responsive transcription factor ERF003 [Arabidopsis thaliana]	5.0e-20	91%
RefSeq	Populus trichocarpa	XP_002297803.1	AP2/ERF domain-containing transcription factor [Populus trichocarpa]	6.0e-20	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPV7

Fln msg: Overlapping hits, possible frame ERROR between 149 and 124, Unexpected STOP codon at 3' end. Distance to subject end: 100 aas, your sequence is shorter than subject: 86 - 209

Fln protein: SEIRHPLLKTRVWLGTFETVEDAARAYDEAAILMCGPHHAxxxxxxxxxxAPPSSKPSFLSEALAGKLRQCYLASRNIENARGHC*

Protein Length: 87

Fln nts: TTTCTGAAATTCGCCACCCTCTCTTGAAAACCAGAGTGTGGCTGGGAACATTTGAGACCGTAGAAGATGCAGCGCGTGCCTATGACGAAGCTGCAATACTGATGTGCGGGCCTCATCATGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCACCACCATCTAGCAAGCCTTCTTTTCtGTCTGAAGCACTGGCTGGCAAGCTTCGCCAATGCTATCTGGCTTCTCGCAACATTGAAAATGCAAGAGGGCACTGCTAATAAACATCAGTTGCAGTC

Fln Alignment:

F7JJN6E01BJT57___SEIRHPLLKTRVWLGTFETVEDAARAYDEAAILMCGPHHAxxxxxxxxxAPPSSKPSFLSEALAGKLRQCYLAS
A9NPV7_______________SEIRHPLLKTRIWLGTFETAEDAARAYDEAARMMCGP-RAxxxxxxxxxAPQSPSSKVLSSTLTAKLHRCYMAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain