SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59824

Length: 97 nt

UniGene Fasta

>sp_v3.0_unigene59824
ATGGGAAGACTATGACATCTGAATGCCTCAATCAGGTGCAATTCTACAATGGTCAAAACCCCGTTGTTGCTGTCAACGTTCATTATGGATATAACCA

Ace file of the UniGene sp_v3.0_unigene59824

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI	-	-	1.0e-07	80%
FL-Next	Isoform 2 of DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b	-	-	0.0	63%

Source	Gene names
Sma3	RPD2;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	ribonucleoside binding	GO:0032549	Molecular Function	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	RNA polymerase, beta subunit, conserved site	IPR007121	-	-
Sma3	RNA polymerase Rpb2, domain 7	IPR007641	-	-
Sma3	RNA polymerase Rpb2, domain 3	IPR007645	-	-
Sma3	RNA polymerase Rpb2, domain 4	IPR007646	-	-
Sma3	RNA polymerase Rpb2, domain 5	IPR007647	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LV32-2

Fln msg: Distance to subject end: 389 aas, your sequence is shorter than subject: 31 - 1055

Fln protein: GKTMTSECLNQVQFYNGQNPVVAVNVHYGYN

Protein Length: 32

Fln nts: ATGGGAAGACTATGACATCTGAATGCCTCAATCAGGTGCAATTCTACAATGGTCAAAACCCCGTTGTTGCTGTCAACGTTCATTATGGATATAACCA

Fln Alignment:

F7JJN6E01D81TT___KTMTSECLNQVQFYNGQNPVVAVNVHYGYN
Q9LV32-2_____________KTLASECLEKEVLFNGQNAIVAVNVHLGYN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain