SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59751

Length: 177 nt

UniGene Fasta

>sp_v3.0_unigene59751
TTAGCTACACAGAATCTGCATTATGCAAATGTTCTTCCTTCAATAGGTCTCAATGTTTACAGTATTTTACAACATAGATACACTAGTGAAAATAGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATTAATCGCTGAGAGAAATAATGTCAGTTGTGGATAC

Ace file of the UniGene sp_v3.0_unigene59751

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L4/L1 family protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQM8_ORYSJ	-	-	9.0e-11	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	50S ribosomal protein L4	-	-	3.152e-08	-

Source	Gene names
Sma3	At2g20060; LOC_Os11g37510; LOC_Os12g30490; Os11g0585700; Os12g0488600; OsI_36619; OsI_38360; OsJ_34399; OsJ_36122; POPTRDRAFT_786295; RCOM_0903300; VITISV_027648;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L4/L1e	IPR002136	-	-
Sma3	Ribosomal protein L4/L1e, bacterial-type	IPR013005	-	-
Sma3		IPR015498	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G20060.1	Ribosomal protein L4/L1 family chr2:8659384-8661227 FORWARD LENGTH=300	2.0e-11	84%
RefSeq	Arabidopsis thaliana	NP_565463.1	large subunit ribosomal protein L4 [Arabidopsis thaliana]	2.0e-11	84%
RefSeq	Populus trichocarpa	XP_002331557.1	predicted protein [Populus trichocarpa]	2.0e-11	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ3

Fln msg: Separated hits, possible frame ERROR between 75 and 96, your sequence is shorter than subject: 51 - 323

Fln protein: LATQNLHYANVLPSIGLNVYSILQxxxxxxxxTVDAVNRIVERMHTPINR*

Protein Length: 52

Fln nts: TTAGCTACACAGAATCTGCATTATGCAAATGTTCTTCCTTCAATAGGTCTCAATGTTTACAGTATTTTACAACAxxxxxxxxxxxxxxxxxxxxxGACAGTAGATGCAGTGAATCGAATTGTGGAGCGGATGCACACTCCAATTAATCGCTGAGAGAAATAATGTCAGTTGTGGATAC

Fln Alignment:

F7JJN6E01ARHLD___LATQNLHYANVLPSIGLNVYSILQHxxxxxxxTVDAVNRIVERMHTPINR
D5ABZ3_______________LATQNLHYANVLPSIGLNVYSILQHxxxxxxxTADAVNRIVERMHTPINR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain