SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59689

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene59689
ATTGCCCGACAGTTGTTTGACAATGCATTGAAAGTGATATGGCTCCATGGAATGCAATGATTGCTGGGTATGCTCAAACTGGACATGCTCATGAGTCATTGATGCTCTTTAGTCAAATGCAACTTGAGGATATGAAACCCGACCTGATCACTATACTGAGTGTGATCCCTGCATATTCCCATTTAGCAGCTTTGCAACAGGGCAAGGTCATCCATGGTTATGTAATTAGTAGTGGATTT

Ace file of the UniGene sp_v3.0_unigene59689

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LW63.1\|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At3g23330 dbj\|BAB02277.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76753.1\| pentatric	-	-	1.0e-11	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23330.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr3:8347200-8349347 FORWARD LENGTH=715	9.0e-16	48%
RefSeq	Arabidopsis thaliana	NP_188975.3	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-15	48%
RefSeq	Populus trichocarpa	XP_002311156.1	predicted protein [Populus trichocarpa]	4.0e-18	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 340 aas, your sequence is shorter than subject: 79 - 795

Fln protein: CPTVV*QCIESDMAPWNAMIAGYAQTGHAHESLMLFSQMQLEDMKPDLITILSVIPAYSHLAALQQGKVIHGYVISSGF

Protein Length: 80

Fln nts: ATTGCCCGACAGTTGTTTGACAATGCATTGAAAGTGATATGGCTCCATGGAATGCAATGATTGCTGGGTATGCTCAAACTGGACATGCTCATGAGTCATTGATGCTCTTTAGTCAAATGCAACTTGAGGATATGAAACCCGACCTGATCACTATACTGAGTGTGATCCCTGCATATTCCCATTTAGCAGCTTTGCAACAGGGCAAGGTCATCCATGGTTATGTAATTAGTAGTGGATTT

Fln Alignment:

F7JJN6E01CZLBN___IESDMAPWNAMIAGYAQTGHAHESLMLFSQMQLEDMKPDLITILSVIPAYSHLAALQQGKVIHGYVISSGF
B8LQA8_______________IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain