SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59669

Length: 404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene59669
ATGGGGGTTGAAGAGGCTGCCAGATTCCTTCGGCAGCTTGACTAACCTCCACAGCTTGGAGCTGAGTTCGTGCAAGAAGTTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGGATTCGTGCGAGAAGTTGGGGAGGCTGCCAGATTCCTTCAGCAGCTTGACGAACCTCCACAGCTTGGACCTGAGTTCGTGCCAGAAGTTGGAGAGGCTGCCAGATTCCATCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGCGTTCGTGCAAGAACTTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGAGGAACCTCCACAGCTTGGACCTGGGTTGGTGCGTGAAGTTGGAGAAGCTGCCAGAATCCTTCGGCAGCTTGACGA

Ace file of the UniGene sp_v3.0_unigene59669 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	1.0e-33	57%
FL-Next	sp=Probable disease resistance protein At5g66910; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Sma3	Disease resistance protein (TIR-NBS-LRR class), putative	-	-	4.615e-08	-

Source	Gene names
Sma3	At1g69550; At2g14080; At3g04220; At5g11250; F10D13_24; F2I11_140; MRGH5; OSJNBa0050G13.13; Os01g0260500; OsI_01261; OsI_30909; OsJ_01178; OsJ_05392; OsJ_28895; P0699D11.16; PHYPADRAFT_132267; PHYPADRAFT_141262; PHYPADRAFT_145827; PHYPADRAFT_148; PHYPADRAF

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Protein of unknown function DUF220	IPR003863	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04220.1	Disease resistance protein (TIR-NBS-LRR class) family chr3:1109118-1112188 REVERSE LENGTH=867	1.0e-33	50%
RefSeq	Arabidopsis thaliana	NP_187072.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	2.0e-33	50%
RefSeq	Populus trichocarpa	XP_002328456.1	predicted protein [Populus trichocarpa]	1.0e-34	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FKZ0

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 134 - 815

Fln protein: WGLKRLPDSFGSLTNLHSLELSSCKKLERLPDSFGSLTNLHSLDLDSCEKLGRLPDSFSSLTNLHSLDLSSCQKLERLPDSIGSLTNLHSLDLRSCKNLERLPDSFGSLRNLHSLDLGWCVKLEKLPESFGSLT

Protein Length: 135

Fln nts: ATGGGGGTTGAAGAGGCTGCCAGATTCCTTCGGCAGCTTGACTAACCTCCACAGCTTGGAGCTGAGTTCGTGCAAGAAGTTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGGATTCGTGCGAGAAGTTGGGGAGGCTGCCAGATTCCTTCAGCAGCTTGACGAACCTCCACAGCTTGGACCTGAGTTCGTGCCAGAAGTTGGAGAGGCTGCCAGATTCCATCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGCGTTCGTGCAAGAACTTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGAGGAACCTCCACAGCTTGGACCTGGGTTGGTGCGTGAAGTTGGAGAAGCTGCCAGAATCCTTCGGCAGCTTGACGA

Fln Alignment:

F7QVD2L01AL2JR___WGLKRLPDSFGSLTNLHSLELSSCKKLERLPDSFGSLTNLHSLDLDSCEKLGRLPDSFSSLTNLHSLDLSSCQKLERLPDSIGSLTNLHSLDLRSCKNLERLPDSFGSLRNL
Q9FKZ0_______________YDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRLEVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCSGCE-LPDSVRYLENL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain