SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59657

Length: 292 nt

UniGene Fasta

>sp_v3.0_unigene59657
GATAGAGAAGGTTACGCCCTGCTTGGTGTTGAATAAGATAGATCGCCTTATCACTGAGCTGAAGCTTACCCCTATGGAGGCCTACACCCGATTGCAGAACATTGTCCATGAGGTCAACAACATTATCAGTGCCTACCAATCAGAGAAGTATCTCTCTGATGTTGACTCTATTATTGCGGGAGCAGGTGAGTCCCCTGAGATCGAAGAAGGGCTCGATACTCAAGAGGGGGTGATGAGGATGCATTTCAGCCACAGAAAGGTAATGTTGCATTTGCTTGTGCATTGGATGGAT

Ace file of the UniGene sp_v3.0_unigene59657

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Elongation factor EF-2 n=2 Tax=Arabidopsis RepID=F4J2T9_ARATH	-	-	4.0e-25	72%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	70%

Source	Gene names
Sma3	GSVIVT00005997001; PHYPADRAFT_183758; POPTRDRAFT_1086132; POPTRDRAFT_1086137; RCOM_1548160; VITISV_019843;

Source	GOs	Term	Type	Identity
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	RNA polymerase I specific transcription initiation factor RRN3	IPR007991	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G22980.1	Ribosomal protein S5/Elongation factor G/III/V family protein chr3:8160269-8163316 REVERSE LENGTH=1015	1.0e-27	72%
RefSeq	Arabidopsis thaliana	NP_188938.1	elongation factor EF-2 [Arabidopsis thaliana]	2.0e-27	72%
RefSeq	Populus trichocarpa	XP_002313638.1	predicted protein [Populus trichocarpa]	3.0e-25	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1L794

Fln msg: Separated hits, possible frame ERROR between 217 and 232, Distance to subject end: 774 aas, your sequence is shorter than subject: 97 - 1001

Fln protein: IEKVTPCLVLNKIDRLITELKLTPMEAYTRLQNIVHEVNNIISAYQSEKYLSDVDSIIAGAGESPEIEEGLxxxxxxDEDAFQPQKGNVAFACALDG

Protein Length: 98

Fln nts: GATAGAGAAGGTTACGCCCTGCTTGGTGTTGAATAAGATAGATCGCCTTATCACTGAGCTGAAGCTTACCCCTATGGAGGCCTACACCCGATTGCAGAACATTGTCCATGAGGTCAACAACATTATCAGTGCCTACCAATCAGAGAAGTATCTCTCTGATGTTGACTCTATTATTGCGGGAGCAGGTGAGTCCCCTGAGATCGAAGAAGGGCTCGAxxxxxxxxxxxxxxxTGATGAGGATGCATTTCAGCCACAGAAAGGTAATGTTGCATTTGCTTGTGCATTGGATGGAT

Fln Alignment:

F7QVD2L01BGMHQ___IEKVTPCLVLNKIDRLITELKLTPMEAYTRLQNIVHEVNNIISAYQSEKYLSDVDSIIAGAGESPEIEEGLDxxxxxDEDAFQPQKGNVAFACALDG
I1L794_______________IERLTPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSEKYLTDVDSLLAGTGTGTTTGETLExxxxxNEDVFQPQKGNVIFACALDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain