SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59625

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene59625
ATATAATATTGTTCTTAAGAATCGAGCTATTTAAATTTGGTATATATTGATTGTGGCATTTTGATTCATGATTTTGTTAGGGACTGTGGAAAACAAGTTTATCTGGGTGGATTCGACACGGCTCATGCAGCTGCCAGGGCATACGATAGGGCGGCCATCAAGTTCAGGGGTCAAGATGCTGATATAAACTTTAATCTCTCTGACTACGAGG

Ace file of the UniGene sp_v3.0_unigene59625

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	APETALA2-like protein 2 n=1 Tax=Pinus thunbergii RepID=Q76H94_PINTH	-	-	2.0e-09	72%
FL-Next	tr=APETALA2-like protein 2; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	100%
Sma3	APETALA2-like protein	-	-	1.907e-28	-

Source	Gene names
Sma3	AHAP2; AP2; AP2D2; AP2D22; AP2D23; AP2L1; AP2L2; AP2L3; Ap2A; Ap2B; At2g28550; At2g39250; At3g54990; At5g60120; At5g67180; BAP2; CrAP2L1; F28P10.30; GSVIVT00018277001; GSVIVT00023069001; GSVIVT00024452001; GbAP2L1; Gl15; Glossy15; GpAP2L1; H0721B11.5; HAP

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28550.3	RAP2.7 related to AP2.7 chr2:12226168-12228251 REVERSE LENGTH=464	2.0e-11	93%
RefSeq	Arabidopsis thaliana	NP_973553.1	ethylene-responsive transcription factor RAP2-7 [Arabidopsis thaliana]	2.0e-11	93%
RefSeq	Populus trichocarpa	XP_002312046.1	AP2 domain-containing transcription factor [Populus trichocarpa]	1.0e-12	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q76H94

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 398 aas, your sequence is shorter than subject: 70 - 554

Fln protein: I*YCS*ESSYLNLVYIDCGILIHDFVRDCGKQVYLGGFDTAHAAARAYDRAAIKFRGQDADINFNLSDYE

Protein Length: 71

Fln nts: ATATAATATTGTTCTTAAGAATCGAGCTATTTAAATTTGGTATATATTGATTGTGGCATTTTGATTCATGATTTTGTTAGGGACTGTGGAAAACAAGTTTATCTGGGTGGATTCGACACGGCTCATGCAGCTGCCAGGGCATACGATAGGGCGGCCATCAAGTTCAGGGGTCAAGATGCTGATATAAACTTTAATCTCTCTGACTACGAGG

Fln Alignment:

F7QVD2L01BKLDL___DCGKQVYLGGFDTXXXXXXXXXXXXIKFRGQDADINFNLSDYE
Q76H94_______________DCGKQVYLGGFDTAHAAARAYDRAAIKFRGQDADINFNLSDYE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain