SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59610

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene59610
ATGGGCTTCGCAGAACAGGATTTCTCGAACATGTTTTTTGAGAAGATATACAAGCCCATCCCCCTTGGTGTACAATCTGGTTCTGGCCATGATGTGGCGGCATCCCCAGAACGTGGACTTAGATACTGTCAAAGTTGTTCACTATTGTGCAGCTGGATCGAAGCCGTGGAGGTTCAGTGGGAACGAAGAAAATATGGAGGAGGGAAGATA

Ace file of the UniGene sp_v3.0_unigene59610

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	galactinol synthase 2 [Arabidopsis thaliana] gb\|AAG09103.1\|AC009323_14 Putative galactinol synthase [Arabidopsis thaliana] gb\|AAK91426.1\| At1g56600/F25P12_16 [Arabidopsis thaliana] gb\|AAL15412.1\| At1g56600/F25P12_16 [Arabidopsis thaliana] dbj\|BAB78531.1\|	-	-	5.0e-22	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Galactinol synthase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol 3-alpha-galactosyltransferase.	EC:2.4.1.123	-	8.69e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		8.69e-27	%

Source	Gene names
Sma3	At1g09350; At1g56600; At1g60470; At2g47180; At5g30500; AtGolS1; AtGolS2; AtGolS3; CjGolS; F14J9.1; F25P12.95; F8A5.2; GAS1; GAS2; GS; GSVIVT00002727001; GSVIVT00019669001; GSVIVT00022561001; GSVIVT00022565001; GSVIVT00022567001; GSVIVT00022570001; GSVIVT0

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	inositol 3-alpha-galactosyltransferase activity	GO:0047216	Molecular Function	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G56600.1	AtGolS2, GolS2 galactinol synthase 2 chr1:21207620-21209291 FORWARD LENGTH=335	3.0e-24	77%
RefSeq	Arabidopsis thaliana	NP_176053.1	galactinol synthase 2 [Arabidopsis thaliana]	4.0e-24	77%
RefSeq	Populus trichocarpa	XP_002320958.1	predicted protein [Populus trichocarpa]	3.0e-25	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQ99

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 69 - 346

Fln protein: WASQNRISRTCFLRRYTSPSPLVYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRFSGNEENMEEGR

Protein Length: 70

Fln nts: ATGGGCTTCGCAGAACAGGATTTCTCGAACATGTTTTTTGAGAAGATATACAAGCCCATCCCCCTTGGTGTACAATCTGGTTCTGGCCATGATGTGGCGGCATCCCCAGAACGTGGACTTAGATACTGTCAAAGTTGTTCACTATTGTGCAGCTGGATCGAAGCCGTGGAGGTTCAGTGGGAACGAAGAAAATATGGAGGAGGGAAGATA

Fln Alignment:

F7QVD2L01AI2IB___FLRRYTSPSPLVYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRFSGNEENME
A9NQ99_______________FFEKIYKPIPLVYNLVLAMMWRHPQNVDLDTVKVVHYCAAGSKPWRFSGNEENME

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain