SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59601

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene59601
ACATTGGGGGCAGCAGTGGGCAGCTTCAGCGTGGACCGTGGGCAGCTTCCGGCAGCAGTGGGCAGTGGACCGTGCAGCTTCAACGGCAGTGGACGGTAAAGTTATGGTGTGATTGTCCATTCTGGCCTGATAATGGGATGTACCATCTCAAAGATTGTAGTGTCTGTAAGTGTCCAAAACATGAGTTCCCTGAGAATTTTAAAGGACCAAGAGGACAACTTCCTGTTGATGACTTAAAA

Ace file of the UniGene sp_v3.0_unigene59601

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endoplasmic oxidoreductin-1, putative n=1 Tax=Ricinus communis RepID=B9T812_RICCO	-	-	3.0e-15	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on a sulfur group of donors, With a disulfide as acceptor.	EC:1.8.4.-	-	2.212e-09	-

Source	Gene names
Sma3	AERO1; AERO2; At1g72280; At2g38960; ERO1; ERO2; GSVIVT00025811001; GSVIVT00028334001; PHYPADRAFT_23278; POPTRDRAFT_1070318; POPTRDRAFT_569143; RCOM_0229980; T7F6.13; T9N14.18; VITISV_002206;

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	GO:0016671	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	protein thiol-disulfide exchange	GO:0006467	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	electron transport chain	GO:0022900	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Endoplasmic reticulum oxidoreductin 1	IPR007266	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72280.1	AERO1, ERO1 endoplasmic reticulum oxidoreductins 1 chr1:27212039-27214506 REVERSE LENGTH=469	3.0e-20	63%
RefSeq	Arabidopsis thaliana	NP_177372.1	endoplasmic oxidoreductin-1 [Arabidopsis thaliana]	4.0e-20	63%
RefSeq	Populus trichocarpa	XP_002298934.1	predicted protein [Populus trichocarpa]	2.0e-19	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPH1

Fln msg: Distance to subject end: 308 aas, your sequence is shorter than subject: 79 - 456

Fln protein: IGGSSGQLQRGPWAASGSSGQWTVQLQRQWTVKLWCDCPFWPDNGMYHLKDCSVCKCPKHEFPENFKGPRGQLPVDDLK

Protein Length: 80

Fln nts: ACATTGGGGGCAGCAGTGGGCAGCTTCAGCGTGGACCGTGGGCAGCTTCCGGCAGCAGTGGGCAGTGGACCGTGCAGCTTCAACGGCAGTGGACGGTAAAGTTATGGTGTGATTGTCCATTCTGGCCTGATAATGGGATGTACCATCTCAAAGATTGTAGTGTCTGTAAGTGTCCAAAACATGAGTTCCCTGAGAATTTTAAAGGACCAAGAGGACAACTTCCTGTTGATGACTTAAAA

Fln Alignment:

F7QVD2L01DXQ91___RQWTVKLWCDCPFWPDNGMYHLKDCSVCKCPKHEFPENFKGPRGQLPVDDLK
B8LPH1_______________RYFKAKLWCDCPFWPDDGMCHLRDCSVCECPEHEFPETFKVPSGQLPVDDLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain