SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene59519

Length: 306 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene59519
TACTGATGTGACTGTCTTTCTAATATAATATTGTCACTGATCCATCTTCGATTGTTGTCAGTTTTTCATAAACAGCAAGGATGGAACTCAGATACCAATGTTCATTGTATCCAAGAAAGACATTGCTCTTGATGGTTCTCATCCAGCTCTATTACATGGTTATGGGGGCTTTAACATTAGCAACACCCATACTTCAGTGTTGGTCGTATTTTCATTTCAAGACATCCAGGGGCAGTTTTTGCACTTGCAAATATTCGTGGTGGTGGTGAATATGGAGAAGAATGGCATAAAGCAGGCTCTCTTGCC

Ace file of the UniGene sp_v3.0_unigene59519 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine-type endopeptidase n=1 Tax=Cucumis melo subsp. melo RepID=E5GCD4_CUCME	-	-	4.0e-26	80%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	69%
Sma3	Putative prolyl endopeptidase	-	-	3.741e-09	-

Source	Gene names
Sma3	At1g76140; GSVIVT00015534001; OSJNBa0084K11.14; Os01g0108200; Os04g0561500; OsI_00077; OsI_16976; OsJ_00069; OsJ_15773; P0482C06.18; PHYPADRAFT_114923; PHYPADRAFT_182722; PHYPADRAFT_199126; PHYPADRAFT_64676; POPTRDRAFT_642867; POPTRDRAFT_761565; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76140.1	Prolyl oligopeptidase family protein chr1:28571187-28574852 FORWARD LENGTH=795	6.0e-16	55%
RefSeq	Arabidopsis thaliana	NP_001117606.1	prolyl oligopeptidase-like protein [Arabidopsis thaliana]	8.0e-16	55%
RefSeq	Populus trichocarpa	XP_002307762.1	predicted protein [Populus trichocarpa]	5.0e-28	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1MC00

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 187 and 187, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 196 aas, your sequence is shorter than subject: 102 - 762

Fln protein: TDVTVFLI*YCH*SIFDCCQFFINSKDGTQIPMFIVSKKDIALDGSHPALLHGYGGFNISNxxYFSVGRIFISRHPGAVFALANIRGGGEYGEEWHKAGSLA

Protein Length: 103

Fln nts: TACTGATGTGACTGTCTTTCTAATATAATATTGTCACTGATCCATCTTCGATTGTTGTCAGTTTTTCATAAACAGCAAGGATGGAACTCAGATACCAATGTTCATTGTATCCAAGAAAGACATTGCTCTTGATGGTTCTCATCCAGCTCTATTACATGGTTATGGGGGCTTTAACATTAGCAACxxxxxxTACTTCAGTGTTGGTCGTATTTTCATTTCAAGACATCCAGGGGCAGTTTTTGCACTTGCAAATATTCGTGGTGGTGGTGAATATGGAGAAGAATGGCATAAAGCAGGCTCTCTTGCC

Fln Alignment:

F7QVD2L01DE5GI___SIFDCCQFFINSKDGTQIPMFIVSKKDIALDGSHPALLHGYGGFNISNTPYFSVGRIFISRHPGAVFALANIRGGGEYGEEWHKAGSLA
I1MC00_______________SEFHVNQVFVPSKDGTKIPMFIVARKDIVLDGSHPCLLYGYGGFNVSLTPYFNISRTVLARHLGAVFCIANIRGGGEYGEEWHKSGSLA

SSRs (tot: 1)

Start position	End position	Sequence	Length
39	50	CAC CAC CAC CAC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain